RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SP1P08047 785 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 PATE4P0C8F1 98 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 B4GALT1P15291 398 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF138P52744 262 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 MFAP2P55001 183 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 ARF1P84077 181 aaKnown RBP4.5□□□□□ -1.69
CSDE1-202ENST00000339438 MIR17HGQ75NE6 70 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 ATP5L2Q7Z4Y8 100 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 SPTSSAQ969W0 71 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 RAB37Q96AX2 223 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 RITA1Q96K30 269 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 CXXC4Q9H2H0 198 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 C12orf49Q9H741 205 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF355PQ9NSJ1 428 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 HECTD4Q9Y4D8 3996 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 A0A0J9YW62 118 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 TRBV7-9A0A0J9YWB2 115 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 A0A1W2PRD5 423 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 A0A1W2PRF3 423 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 A0A1W2PRM7 423 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 NPIPA3F8WFD2 350 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 OR5AL1P0C617 328 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 MEOX1P50221 254 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 RPL24P83731 157 aaKnown RBP4.5□□□□□ -1.69
CSDE1-202ENST00000339438 CEACAM16Q2WEN9 425 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 LINC00322Q6ZN03 302 aaPredicted RBP4.5□□□□□ -1.69
CSDE1-202ENST00000339438 C8orf86Q6ZUL3 223 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 TTC9CQ8N5M4 171 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 C20orf78Q9BR46 151 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 NDFIP1Q9BT67 221 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 TMEM133Q9H2Q1 129 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 SLC25A10Q9UBX3 287 aaPredicted RBP4.5□□□□□ -1.69
CSDE1-202ENST00000339438 PKDREJQ9NTG1 2253 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 DYSFO75923 2080 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 SRRM4A7MD48 611 aaKnown RBP4.5□□□□□ -1.69
CSDE1-202ENST00000339438 SMAD7O15105 426 aaKnown RBP4.5□□□□□ -1.69
CSDE1-202ENST00000339438 DHHO43323 396 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 SYNGR1O43759 233 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 FXYD2P54710 66 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 SSBP2P81877 361 aaPredicted RBP4.5□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF497Q6ZNH5 498 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 TMEM251Q8N6I4 163 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 OR4A16Q8NH70 328 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 GRAMD2BQ96HH9 432 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 PRSS22Q9GZN4 317 aa4.5□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF331Q9NQX6 463 aaPredicted RBP4.5□□□□□ -1.69
CSDE1-202ENST00000339438 LINC00473A8K010 186 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 HIGD1CA8MV81 97 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 MT-ATP8P03928 68 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 LIPFP07098 398 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 CCNOP22674 350 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 SMCPP49901 116 aaPredicted RBP4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FOXA3P55318 350 aaPredicted RBP4.49□□□□□ -1.69
CSDE1-202ENST00000339438 XGP55808 180 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 HERV-K104P63124 156 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FBXL19-AS1Q494R0 122 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 TIMM23BQ5SRD1 257 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 NFE4Q86UQ8 179 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 PIGCQ92535 297 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 ARPC1AQ92747 370 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 ABCA2Q9BZC7 2435 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 IGKV1OR2-108A0A075B7D4 117 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FAM90A9PA6NNJ1 464 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 PROP1O75360 226 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FSTL3O95633 263 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 ADORA2A-AS1P86434 159 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF766Q5HY98 468 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FA2HQ7L5A8 372 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 GALMQ96C23 342 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 TTTY12Q9BZ98 90 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FAM215AQ9Y5M1 114 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 ABCA4P78363 2273 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 IGHG4P01861 327 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FAM106CPP0CH98 169 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 DSCR4P56555 118 aaPredicted RBP4.49□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF816Q0VGE8 651 aaPredicted RBP4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FAM106AQ4KMX7 169 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 PCP2Q8IVA1 136 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 OR10D3Q8NH80 312 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 SSMEM1Q8WWF3 244 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 ZNF488Q96MN9 340 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 MAP1LC3CQ9BXW4 147 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 SRXN1Q9BYN0 137 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 UNC79Q9P2D8 2635 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 A0A096LPE4 126 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 A0A1W2PPZ6 126 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FABP2P12104 132 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 MYCNOSP40205 109 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 PRR30Q53SZ7 412 aaPredicted RBP4.49□□□□□ -1.69
CSDE1-202ENST00000339438 MORN5Q5VZ52 161 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 LINC00596Q86U02 117 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 TMEM116Q8NCL8 245 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 OR9G4Q8NGQ1 327 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 FAM167A-AS1Q96KT0 104 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 MLST8Q9BVC4 326 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 TMUB1Q9BVT8 246 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 KCNIP1Q9NZI2 227 aa4.49□□□□□ -1.69
CSDE1-202ENST00000339438 KLF13Q9Y2Y9 288 aaPredicted RBP4.49□□□□□ -1.69
CSDE1-202ENST00000339438 K7ERJ3 54 aa4.48□□□□□ -1.69
CSDE1-202ENST00000339438 PRB1P04280 392 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms