RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 VWC2Q2TAL6 325 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 ZNF546Q86UE3 836 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 STXBP6Q8NFX7 210 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 OR5C1Q8NGR4 320 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 THAP6Q8TBB0 222 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 MGST2Q99735 147 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 B9D2Q9BPU9 175 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 MS4A6AQ9H2W1 248 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 TUBA4BQ9H853 241 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 UBQLN2Q9UHD9 624 aa11.88□□□□□ -0.51
CCDC28A-201ENST00000332797 HELTA6NFD8 242 aa11.87□□□□□ -0.51
CCDC28A-201ENST00000332797 CAMLGP49069 296 aa11.87□□□□□ -0.51
CCDC28A-201ENST00000332797 RAB31Q13636 194 aa11.87□□□□□ -0.51
CCDC28A-201ENST00000332797 CLINT1Q14677 625 aa11.87□□□□□ -0.51
CCDC28A-201ENST00000332797 STPG3Q8N7X2 389 aa11.87□□□□□ -0.51
CCDC28A-201ENST00000332797 WDR83OSQ9Y284 106 aa11.87□□□□□ -0.51
CCDC28A-201ENST00000332797 FGF7P21781 194 aa11.86□□□□□ -0.51
CCDC28A-201ENST00000332797 RPL12P30050 165 aaKnown RBP11.86□□□□□ -0.51
CCDC28A-201ENST00000332797 SIGLEC15Q6ZMC9 328 aa11.86□□□□□ -0.51
CCDC28A-201ENST00000332797 ASB13Q8WXK3 278 aa11.86□□□□□ -0.51
CCDC28A-201ENST00000332797 SRD5A3Q9H8P0 318 aa11.86□□□□□ -0.51
CCDC28A-201ENST00000332797 C19orf73Q9NVV2 129 aa11.86□□□□□ -0.51
CCDC28A-201ENST00000332797 SLC45A2Q9UMX9 530 aa11.86□□□□□ -0.51
CCDC28A-201ENST00000332797 TGP01266 2768 aa11.86□□□□□ -0.51
CCDC28A-201ENST00000332797 hCG_2014768A0A024R1R8 64 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 A8MZ25 164 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 HYPMO75409 117 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 OR5G3P0C626 314 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 LYL1P12980 280 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 RAP2BP61225 183 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 ODF3L2Q3SX64 289 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 CHAC2Q8WUX2 184 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 ASCL2Q99929 193 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 GGTLC1Q9BX51 225 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 ARL6Q9H0F7 186 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 SLC25A22Q9H936 323 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 HIGD1AQ9Y241 93 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 HSPB11Q9Y547 144 aa11.85□□□□□ -0.51
CCDC28A-201ENST00000332797 AP2S1P53680 142 aaPredicted RBP11.84□□□□□ -0.51
CCDC28A-201ENST00000332797 PLP1P60201 277 aa11.84□□□□□ -0.51
CCDC28A-201ENST00000332797 FGL1Q08830 312 aa11.84□□□□□ -0.51
CCDC28A-201ENST00000332797 C1orf194Q5T5A4 169 aa11.84□□□□□ -0.51
CCDC28A-201ENST00000332797 SMIM3Q9BZL3 60 aa11.84□□□□□ -0.51
CCDC28A-201ENST00000332797 FBXL17Q9UF56 701 aa11.84□□□□□ -0.51
CCDC28A-201ENST00000332797 TRAV2A0A0B4J234 112 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 ZNF98A6NK75 572 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 S100A7P31151 101 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 Q5BKY6 102 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 MIC13Q5XKP0 118 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 OR8I2Q8N0Y5 310 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 FAM24BQ8N5W8 94 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 SCRT1Q9BWW7 348 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 H3BRN7 92 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 K7EQG2 157 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 COX7A2P2O60397 106 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 OPCMLQ14982 345 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 PXDC1Q5TGL8 231 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 LEMD1Q68G75 181 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 SBSPONQ8IVN8 264 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 OR2T35Q8NGX2 323 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 UHRF2Q96PU4 802 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 ATP5SQ99766 215 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 SLC25A39Q9BZJ4 359 aaPredicted RBP11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 ARV1Q9H2C2 271 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 MAP6D1Q9H9H5 199 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 NRN1Q9NPD7 142 aa11.83□□□□□ -0.52
CCDC28A-201ENST00000332797 MPDU1O75352 247 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 CMC4P56277 68 aaPredicted RBP11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 PRR20EP86478 221 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 PRR20CP86479 221 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 PRR20DP86480 221 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 PRR20BP86481 221 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 PRR20AP86496 221 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 PATE2Q6UY27 113 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 S100A7AQ86SG5 101 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 APRG1Q8IVJ8 170 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 DCANP1Q8TF63 244 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 CITED4Q96RK1 184 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 FAM110AQ9BQ89 295 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 SHANK2-AS3Q9BTD1 123 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 NPCDR1Q9BY65 106 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 SLC25A32Q9H2D1 315 aa11.82□□□□□ -0.52
CCDC28A-201ENST00000332797 FXYD6-FXYD2A0A087WZ82 144 aa11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 RBMY1BA6NDE4 496 aaKnown RBP11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 RBMY1EA6NEQ0 496 aaKnown RBP11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 RBMY1DP0C7P1 496 aaKnown RBP11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 RPL29P47914 159 aaKnown RBP11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 B2MP61769 119 aa11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 ZNF124Q15973 351 aa11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 Q6ZRG5 221 aa11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 WDR61Q9GZS3 305 aaKnown RBP11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 PXMP4Q9Y6I8 212 aa11.81□□□□□ -0.52
CCDC28A-201ENST00000332797 COL7A1Q02388 2944 aa11.8□□□□□ -0.52
CCDC28A-201ENST00000332797 DNAH9Q9NYC9 4486 aa11.8□□□□□ -0.52
CCDC28A-201ENST00000332797 ZNF688P0C7X2 276 aa11.8□□□□□ -0.52
CCDC28A-201ENST00000332797 GALR1P47211 349 aa11.8□□□□□ -0.52
CCDC28A-201ENST00000332797 DEFB131AP59861 70 aa11.8□□□□□ -0.52
CCDC28A-201ENST00000332797 C10orf113Q5VZT2 155 aa11.8□□□□□ -0.52
CCDC28A-201ENST00000332797 LINC00305Q7Z4B0 112 aa11.8□□□□□ -0.52
CCDC28A-201ENST00000332797 SLC39A9Q9NUM3 307 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms