RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 CXCL1P09341 107 aa7.88□□□□□ -1.15
HMGB3-201ENST00000325307 MDKP21741 143 aaPredicted RBP7.88□□□□□ -1.15
HMGB3-201ENST00000325307 NDUFA6P56556 154 aa7.88□□□□□ -1.15
HMGB3-201ENST00000325307 CD69Q07108 199 aa7.88□□□□□ -1.15
HMGB3-201ENST00000325307 COA6Q5JTJ3 125 aaKnown RBP7.88□□□□□ -1.15
HMGB3-201ENST00000325307 TMEM86BQ8N661 226 aa7.88□□□□□ -1.15
HMGB3-201ENST00000325307 MT-CO2P00403 227 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 GZMBP10144 247 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 HAGHQ16775 308 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 GFI1BQ5VTD9 330 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 ZNF664Q8N3J9 261 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 ZNF709Q8N972 641 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 OR2T6Q8NHC8 308 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 MS4A10Q96PG2 267 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 HIST1H2BLQ99880 126 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 FNDC4Q9H6D8 234 aaPredicted RBP7.87□□□□□ -1.15
HMGB3-201ENST00000325307 RPRMQ9NS64 109 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 GGCTO75223 188 aaKnown RBP7.87□□□□□ -1.15
HMGB3-201ENST00000325307 VWC2Q2TAL6 325 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 FAM110DQ8TAY7 271 aaPredicted RBP7.87□□□□□ -1.15
HMGB3-201ENST00000325307 TAF15Q92804 592 aaKnown RBP eCLIP7.87□□□□□ -1.15
HMGB3-201ENST00000325307 PSMG3Q9BT73 122 aaPredicted RBP7.87□□□□□ -1.15
HMGB3-201ENST00000325307 EIF5A2Q9GZV4 153 aaKnown RBP7.87□□□□□ -1.15
HMGB3-201ENST00000325307 NPVFQ9HCQ7 196 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 THYN1Q9P016 225 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 FAM181BA6NEQ2 426 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 PPP1R2P9O14990 202 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 TGOLN2O43493 480 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 OR2J3O76001 311 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 CACNG8Q8WXS5 425 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 S4R3C0 116 aa7.87□□□□□ -1.15
HMGB3-201ENST00000325307 RND2P52198 227 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 ICAM4Q14773 271 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 ACSM6Q6P461 480 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 NPIPB3Q92617 1050 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 SPXQ9BT56 116 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 DNAJC4Q9NNZ3 241 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 ESM1Q9NQ30 184 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 IGF1P05019 195 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 RAB31Q13636 194 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 TEPPQ6URK8 271 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 TREML4Q6UXN2 200 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 DPPA3Q6W0C5 159 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 CENPVQ7Z7K6 275 aaPredicted RBP7.86□□□□□ -1.15
HMGB3-201ENST00000325307 TMEM242Q9NWH2 141 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 RBFOX3A6NFN3 312 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 M0R036 132 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 CEBPGP53567 150 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 AKR1C8PQ5T2L2 129 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 STXBP6Q8NFX7 210 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 FANCD2OSQ96PS1 177 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 FBXL7Q9UJT9 491 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 WDR83OSQ9Y284 106 aa7.86□□□□□ -1.15
HMGB3-201ENST00000325307 ZFP92A6NM28 416 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 BRI3O95415 125 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 RPS10P46783 165 aaKnown RBP7.85□□□□□ -1.15
HMGB3-201ENST00000325307 IGLV11-55A0A075B6I3 123 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 TRAV1-1A0A0B4J248 108 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 ELLP55199 621 aaPredicted RBP7.85□□□□□ -1.15
HMGB3-201ENST00000325307 RHOGP84095 191 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 TMEM144Q7Z5S9 345 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 ZNF329Q86UD4 541 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 C20orf24Q9BUV8 137 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 NPCDR1Q9BY65 106 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 ZFP30Q9Y2G7 519 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 C17orf112F2Z3M2 114 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 IGHV3-23P01764 117 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 RPP25LQ8N5L8 163 aaKnown RBP7.85□□□□□ -1.15
HMGB3-201ENST00000325307 ZNF702PQ9H963 129 aa7.85□□□□□ -1.15
HMGB3-201ENST00000325307 I3L2K1 104 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 MPDU1O75352 247 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 NDUFB8O95169 186 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 TRGV3P03979 118 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 SRP19P09132 144 aaKnown RBP7.84□□□□□ -1.15
HMGB3-201ENST00000325307 ZNF506Q5JVG8 444 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 TMEM183AQ8IXX5 376 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 JMJD8Q96S16 334 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 PGPEP1Q9NXJ5 209 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 MRPL36Q9P0J6 103 aaKnown RBP7.84□□□□□ -1.15
HMGB3-201ENST00000325307 FNDC10F2Z333 226 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 K7EIM0 57 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 CCL25O15444 150 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 GCGP01275 180 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 TRGC1P0CF51 173 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 OR10J1P30954 320 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 CRIP2P52943 208 aaPredicted RBP7.84□□□□□ -1.15
HMGB3-201ENST00000325307 TPPP2P59282 170 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 C15orf32Q32M92 178 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 Q56UQ5 140 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 TMEM41BQ5BJD5 291 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 PVRIGQ6DKI7 326 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 OR10G4Q8NGN3 311 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 MBD3L1Q8WWY6 194 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 MGST2Q99735 147 aa7.84□□□□□ -1.15
HMGB3-201ENST00000325307 HILS1P60008 231 aa7.84□□□□□ -1.16
HMGB3-201ENST00000325307 SERF2P84101 59 aa7.84□□□□□ -1.16
HMGB3-201ENST00000325307 RNF151Q2KHN1 245 aa7.84□□□□□ -1.16
HMGB3-201ENST00000325307 FRZBQ92765 325 aa7.84□□□□□ -1.16
HMGB3-201ENST00000325307 PBDC1Q9BVG4 233 aa7.84□□□□□ -1.16
HMGB3-201ENST00000325307 TIMM9Q9Y5J7 89 aa7.84□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms