RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 HERVK_113P61574 105 aa11.97□□□□□ -0.49
TCOF1-201ENST00000323668 IGHV3OR16-13A0A075B7E8 117 aa11.97□□□□□ -0.49
TCOF1-201ENST00000323668 TRAV8-1A0A0A6YYK1 113 aa11.97□□□□□ -0.49
TCOF1-201ENST00000323668 IGHV3-74A0A0B4J1X5 117 aa11.97□□□□□ -0.49
TCOF1-201ENST00000323668 DUX4L9Q6RFH8 374 aaPredicted RBP11.97□□□□□ -0.49
TCOF1-201ENST00000323668 ARPC1AQ92747 370 aa11.97□□□□□ -0.49
TCOF1-201ENST00000323668 IGHV2-26A0A0B4J1V2 119 aa11.96□□□□□ -0.49
TCOF1-201ENST00000323668 C19orf67A6NJJ6 358 aa11.96□□□□□ -0.49
TCOF1-201ENST00000323668 POU2AF1Q16633 256 aa11.96□□□□□ -0.49
TCOF1-201ENST00000323668 IGHV3OR16-8A0A075B7F1 116 aa11.96□□□□□ -0.49
TCOF1-201ENST00000323668 TIMM23O14925 209 aa11.96□□□□□ -0.49
TCOF1-201ENST00000323668 ZNF207O43670 478 aaKnown RBP11.96□□□□□ -0.49
TCOF1-201ENST00000323668 NUP37Q8NFH4 326 aa11.96□□□□□ -0.49
TCOF1-201ENST00000323668 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.96□□□□□ -0.5
TCOF1-201ENST00000323668 K7EN84 100 aa11.96□□□□□ -0.5
TCOF1-201ENST00000323668 A0A1W2PPI3 338 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 CD24P25063 80 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 Q1RN00 199 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 TOMM40O96008 361 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 ADIPOQQ15848 244 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 OR10J6PQ8NGY7 276 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 MS4A6AQ9H2W1 248 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 A0A1B0GWJ7 208 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 UNQ6494/PRO21346Q6UXR6 183 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 SIGLEC9Q9Y336 463 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 SYS1-DBNDD2H3BUS1 97 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 MMP23AO75900 390 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 FAM71F2Q6NXP2 309 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 TEX43Q6ZNM6 134 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 MED12LQ86YW9 2145 aa11.95□□□□□ -0.5
TCOF1-201ENST00000323668 IGHV1-3A0A0C4DH29 117 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 IGLC2P0DOY2 106 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 IGLC3P0DOY3 106 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 HIST1H1AQ02539 215 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-201ENST00000323668 PSMG4Q5JS54 123 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 WFDC3Q8IUB2 231 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 DCAF16Q9NXF7 216 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 SLAQ13239 276 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 FAM231DQ6ZW35 169 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 ZNF295-AS1Q8N0V1 137 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 SRRM4A7MD48 611 aaKnown RBP11.94□□□□□ -0.5
TCOF1-201ENST00000323668 HBDP02042 147 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 SMIM12Q96EX1 92 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 CACNA1BQ00975 2339 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 FABP5P3A8MUU1 101 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 LYPD2Q6UXB3 125 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 Q6ZS92 163 aa11.94□□□□□ -0.5
TCOF1-201ENST00000323668 MRPS16Q9Y3D3 137 aaKnown RBP11.94□□□□□ -0.5
TCOF1-201ENST00000323668 SMIM27A0A1W2PRY6 76 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 hDV102S1A0JD36 115 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 MPV17L2Q567V2 206 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 KHDC1LQ5JSQ8 128 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 HIST1H4GQ99525 98 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 NUPR1O60356 82 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 TMEM190Q8WZ59 177 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 PHLDA3Q9Y5J5 127 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 SMIM13P0DJ93 91 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 PRB4P10163 310 aaPredicted RBP11.93□□□□□ -0.5
TCOF1-201ENST00000323668 ZNF502Q8TBZ5 544 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 YPEL4Q96NS1 127 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 SLC25A2Q9BXI2 301 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 TMEM160Q9NX00 188 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 ZNF138P52744 262 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 ZNF833PQ6ZTB9 187 aa11.93□□□□□ -0.5
TCOF1-201ENST00000323668 IGLV3-9A0A075B6K5 115 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 IGHV3-49A0A0A0MS15 119 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 KIR2DL5BA0A0G2JN68 375 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 KIR2DL5BA0A0G2JPC4 375 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 WT1-ASQ06250 92 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 KIR2DL5AQ8N109 375 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 Q8TCH9 128 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 KLK15Q9H2R5 256 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 TNCP24821 2201 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 CACNG7P62955 275 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 RPRMLQ8N4K4 120 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 ORAOV1Q8WV07 137 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 C5orf30Q96GV9 206 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 F2Z2F3 143 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 ATP5LO75964 103 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 KIR3DL3Q8N743 410 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 EEF1AKMT3Q96AZ1 226 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 TRAV8-6A0A0B4J262 113 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 RNF5Q99942 180 aa11.92□□□□□ -0.5
TCOF1-201ENST00000323668 UCNP55089 124 aa11.91□□□□□ -0.5
TCOF1-201ENST00000323668 SPACA3Q8IXA5 215 aa11.91□□□□□ -0.5
TCOF1-201ENST00000323668 UBE2V1Q13404 147 aa11.91□□□□□ -0.5
TCOF1-201ENST00000323668 TPTE2P1Q5T6R2 138 aa11.91□□□□□ -0.5
TCOF1-201ENST00000323668 IFI27L1Q96BM0 104 aa11.91□□□□□ -0.5
TCOF1-201ENST00000323668 EML6Q6ZMW3 1958 aa11.91□□□□□ -0.5
TCOF1-201ENST00000323668 IGHV3-66A0A0C4DH42 116 aa11.91□□□□□ -0.5
TCOF1-201ENST00000323668 ZGRF1Q86YA3 2104 aa11.91□□□□□ -0.5
TCOF1-201ENST00000323668 PPBPP02775 128 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 ATP5G2Q06055 141 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 C3orf36Q3SXR2 165 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 TM4SF20Q53R12 229 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 RCHY1Q96PM5 261 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 FOXC2Q99958 501 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 EML5Q05BV3 1969 aa11.9□□□□□ -0.5
TCOF1-201ENST00000323668 A0A0G2JNJ9 132 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms