RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 KLRB1Q12918 225 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 GOLT1AQ6ZVE7 132 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 NIT1Q86X76 327 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 MUC15Q8N387 334 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 OR4C5Q8NGB2 326 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 TIMD4Q96H15 378 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 ZFP30Q9Y2G7 519 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 AKAP13Q12802 2813 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 SERTM2A0A1B0GWG4 89 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 OR4C46A6NHA9 309 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 IGLV2-8P01709 118 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 ZNF738Q8NE65 137 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 ZNF596Q8TC21 504 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 FAM167A-AS1Q96KT0 104 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 PMCHL2Q9BQD1 86 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 MCRIP2Q9BUT9 160 aaKnown RBP8.49□□□□□ -1.05
COL3A1-202ENST00000317840 HIVEP3Q5T1R4 2406 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 GATA4P43694 442 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 FAM162BQ5T6X4 162 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 IGFL2Q6UWQ7 119 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 FAM169BQ8N8A8 192 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 FAM222BQ8WU58 562 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 RPEQ96AT9 228 aa8.49□□□□□ -1.05
COL3A1-202ENST00000317840 RPP21Q9H633 154 aaKnown RBP8.49□□□□□ -1.05
COL3A1-202ENST00000317840 DMXL1Q9Y485 3027 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 DOPEY2Q9Y3R5 2298 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 TRAV9-2A0A087WT02 112 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 A0A1W2PPI3 338 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 GRNP28799 593 aaKnown RBP8.48□□□□□ -1.05
COL3A1-202ENST00000317840 MC5RP33032 325 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 ZNF138P52744 262 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 TCTAP57738 103 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 TMEM30BQ3MIR4 351 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 IGFL3Q6UXB1 125 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 LYPD2Q6UXB3 125 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 C5orf17Q8NAS9 161 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 HIGD1AQ9Y241 93 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 TMSB15BA0A087X1C1 80 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 TSPOP30536 169 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 TMEM167AQ8TBQ9 72 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 IGF2BP2-AS1Q96M15 143 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 RASL11BQ9BPW5 248 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 Q9H3A6 140 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 MRPL36Q9P0J6 103 aaKnown RBP8.48□□□□□ -1.05
COL3A1-202ENST00000317840 MSRB2Q9Y3D2 182 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 MEF2CQ06413 473 aaPredicted RBP8.48□□□□□ -1.05
COL3A1-202ENST00000317840 PATE2Q6UY27 113 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 ASCL2Q99929 193 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 TMEM191AQ9H0A3 160 aa8.48□□□□□ -1.05
COL3A1-202ENST00000317840 OR8B3Q8NGG8 313 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 OR5AN1Q8NGI8 311 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 PRSS3P2Q8NHM4 247 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 MRPL27Q9P0M9 148 aaKnown RBP8.47□□□□□ -1.05
COL3A1-202ENST00000317840 TLN2Q9Y4G6 2542 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 K7EQM0 130 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 CT45A10P0DMU9 189 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 COMPP49747 757 aaPredicted RBP8.47□□□□□ -1.05
COL3A1-202ENST00000317840 ARF6P62330 175 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 ZNF833PQ6ZTB9 187 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 KIR3DL3Q8N743 410 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 SRSF12Q8WXF0 261 aaKnown RBP8.47□□□□□ -1.05
COL3A1-202ENST00000317840 S4R3C0 116 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 USP9YO00507 2555 aaPredicted RBP8.47□□□□□ -1.05
COL3A1-202ENST00000317840 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.47□□□□□ -1.05
COL3A1-202ENST00000317840 CBY3A6NI87 242 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 PCP4P48539 62 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 FXYD5Q96DB9 178 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 RBM14Q96PK6 669 aaKnown RBP8.47□□□□□ -1.05
COL3A1-202ENST00000317840 MAP1LC3CQ9BXW4 147 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 FBXL15Q9H469 300 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 HILPDAQ9Y5L2 63 aa8.47□□□□□ -1.05
COL3A1-202ENST00000317840 IGHV1-69-2A0A0G2JMI3 117 aa8.46□□□□□ -1.05
COL3A1-202ENST00000317840 FA2HQ7L5A8 372 aa8.46□□□□□ -1.05
COL3A1-202ENST00000317840 MRPL52Q86TS9 123 aaKnown RBP8.46□□□□□ -1.05
COL3A1-202ENST00000317840 EXOC3-AS1Q8N2X6 119 aa8.46□□□□□ -1.05
COL3A1-202ENST00000317840 CIARTQ8N365 385 aaPredicted RBP8.46□□□□□ -1.05
COL3A1-202ENST00000317840 ALKBH7Q9BT30 221 aaPredicted RBP8.46□□□□□ -1.05
COL3A1-202ENST00000317840 NCOR1P1Q9H4R4 102 aa8.46□□□□□ -1.05
COL3A1-202ENST00000317840 EPG5Q9HCE0 2579 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 IGLL1P15814 213 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 LGALS7P47929 136 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 EBLN2Q6P2I7 272 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 OR4F17Q8NGA8 305 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 hDV102S1A0JD36 115 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 SNAI2O43623 268 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 NUDT3O95989 172 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 LINC00614P0C842 121 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 ADIPOQQ15848 244 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 RNF24Q9Y225 148 aa8.46□□□□□ -1.06
COL3A1-202ENST00000317840 CEACAM4O75871 244 aa8.45□□□□□ -1.06
COL3A1-202ENST00000317840 CNTFRP26992 372 aa8.45□□□□□ -1.06
COL3A1-202ENST00000317840 RBPMS2Q6ZRY4 209 aaKnown RBP8.45□□□□□ -1.06
COL3A1-202ENST00000317840 PNKDQ8N490 385 aa8.45□□□□□ -1.06
COL3A1-202ENST00000317840 RITA1Q96K30 269 aa8.45□□□□□ -1.06
COL3A1-202ENST00000317840 AP1S3Q96PC3 154 aa8.45□□□□□ -1.06
COL3A1-202ENST00000317840 RAB1BQ9H0U4 201 aa8.45□□□□□ -1.06
COL3A1-202ENST00000317840 LOC389332A0A1B0GUA5 103 aa8.45□□□□□ -1.06
COL3A1-202ENST00000317840 A0A1B0GWJ7 208 aa8.45□□□□□ -1.06
COL3A1-202ENST00000317840 TCRAP04437 139 aa8.45□□□□□ -1.06
COL3A1-202ENST00000317840 GDF5OSQ5U4N7 250 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms