RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 VWC2Q2TAL6 325 aa8.89□□□□□ -0.99
LSM3-201ENST00000306024 FAM201AQ5SY85 155 aa8.89□□□□□ -0.99
LSM3-201ENST00000306024 LINC00173Q6ZV60 143 aa8.89□□□□□ -0.99
LSM3-201ENST00000306024 AP5S1Q9NUS5 200 aa8.89□□□□□ -0.99
LSM3-201ENST00000306024 SAMD5Q5TGI4 173 aa8.89□□□□□ -0.99
LSM3-201ENST00000306024 ZNF48Q96MX3 618 aaPredicted RBP8.89□□□□□ -0.99
LSM3-201ENST00000306024 FASNP49327 2511 aaKnown RBP8.89□□□□□ -0.99
LSM3-201ENST00000306024 H3BRM9 83 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 COX6B1P14854 86 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 CD24P25063 80 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 CEACAM3P40198 252 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 DOPEY2Q9Y3R5 2298 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 TRAV26-1A0A087WT03 109 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 LOC389332A0A1B0GUA5 103 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 PRDX2P32119 198 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 LINC00205P59089 165 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 C3orf36Q3SXR2 165 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 GAGE12HA6NDE8 117 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 E7EQL1 145 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 IGHV1-46P01743 117 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 MC5RP33032 325 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 ADAMTSL5Q6ZMM2 481 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 NUP37Q8NFH4 326 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 OR52E5Q8NH55 327 aa8.88□□□□□ -0.99
LSM3-201ENST00000306024 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.88□□□□□ -0.99
LSM3-201ENST00000306024 AREGP15514 252 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 PSG3Q16557 428 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 MTURNQ8N3F0 131 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 FAM222BQ8WU58 562 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 LINC00479Q96M42 142 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 TCF19Q9Y242 345 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 C2orf70A6NJV1 201 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 Q6ZR03 302 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 CHCHD1Q96BP2 118 aaKnown RBP8.87□□□□□ -0.99
LSM3-201ENST00000306024 GEMIN7Q9H840 131 aaKnown RBP8.87□□□□□ -0.99
LSM3-201ENST00000306024 USP24Q9UPU5 2620 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 C22orf46C9J442 243 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 C8orf88P0DMB2 117 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 COL8A1P27658 744 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 WDR82Q6UXN9 313 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 CCL13Q99616 98 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 RAB9BQ9NP90 201 aa8.87□□□□□ -0.99
LSM3-201ENST00000306024 IGHV1-24A0A0C4DH33 117 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 NDUFB3O43676 98 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 APOHP02749 345 aaPredicted RBP8.86□□□□□ -0.99
LSM3-201ENST00000306024 OR9G9P0C7N8 305 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 TMEM177Q53S58 311 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 ITLN2Q8WWU7 325 aaPredicted RBP8.86□□□□□ -0.99
LSM3-201ENST00000306024 FAM168AQ92567 244 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 C11orf52Q96A22 123 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 NPFFR1Q9GZQ6 430 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 OOEPA6NGQ2 149 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 LGALS7P47929 136 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 CD300EQ496F6 205 aaPredicted RBP8.86□□□□□ -0.99
LSM3-201ENST00000306024 STXBP6Q8NFX7 210 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 DCHS1Q96JQ0 3298 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 SMIM17P0DL12 118 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 COX8AP10176 69 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 CRYBA4P53673 196 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 RASL11AQ6T310 242 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 ACP7Q6ZNF0 438 aa8.86□□□□□ -0.99
LSM3-201ENST00000306024 SMIM27A0A1W2PRY6 76 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 C12orf77C9JDV5 145 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 PAXXQ9BUH6 204 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 RABAC1Q9UI14 185 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 A0A1W2PPM0 123 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 SLC25A17O43808 307 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 TFF1P04155 84 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 TMEM249Q2WGJ8 235 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 FBXL19-AS1Q494R0 122 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 TMUB1Q9BVT8 246 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 MALRD1Q5VYJ5 2156 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 A0A1B0GWB2 263 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 SCGB1A1P11684 91 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 PDPNQ86YL7 162 aa8.85□□□□□ -0.99
LSM3-201ENST00000306024 KBTBD11-OT1A0A1B0GTJ5 212 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 PMS2P5A8MQ11 134 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 LYNX1G3V0Z9 82 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 LYNX1P0DP58 116 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 SPATA12Q7Z6I5 190 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 ZNRF1Q8ND25 227 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 SCRT2Q9NQ03 307 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 TMEM140Q9NV12 185 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 NHP2Q9NX24 153 aaKnown RBP8.84□□□□□ -0.99
LSM3-201ENST00000306024 PSMB11A5LHX3 300 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 CDSNQ15517 529 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 Q6ZSR3 168 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 WDR86Q86TI4 376 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 CCDC168Q8NDH2 2452 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 IGLV3-9A0A075B6K5 115 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 PEX7O00628 323 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 HOXA4Q00056 320 aaPredicted RBP8.84□□□□□ -0.99
LSM3-201ENST00000306024 MSMPQ1L6U9 139 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 ETDBQ3ZM63 59 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 FAM53AQ6NSI3 398 aaPredicted RBP8.84□□□□□ -0.99
LSM3-201ENST00000306024 OR4X2Q8NGF9 303 aa8.84□□□□□ -0.99
LSM3-201ENST00000306024 CT45A6P0DMU7 189 aa8.83□□□□□ -1
LSM3-201ENST00000306024 CT45A5P0DMU8 189 aa8.83□□□□□ -1
LSM3-201ENST00000306024 CT45A7P0DMV0 189 aa8.83□□□□□ -1
LSM3-201ENST00000306024 ZNF672Q499Z4 452 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms