RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 IGHV1-69DA0A0B4J2H0 117 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 OVOL1O14753 267 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 IGHV1-69P01742 117 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 ZNF138P52744 262 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 C8orf49Q96NF6 230 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 ALX4Q9H161 411 aaPredicted RBP6.34□□□□□ -1.39
SCN9A-201ENST00000303354 CHD5Q8TDI0 1954 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 PRCDQ00LT1 54 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 C5orf64Q2M2E5 130 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 TMEM30BQ3MIR4 351 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 PVRIGQ6DKI7 326 aa6.34□□□□□ -1.39
SCN9A-201ENST00000303354 NPDC1Q9NQX5 325 aaPredicted RBP6.34□□□□□ -1.39
SCN9A-201ENST00000303354 TTC32Q5I0X7 151 aa6.34□□□□□ -1.4
SCN9A-201ENST00000303354 DICER1Q9UPY3 1922 aaKnown RBP6.34□□□□□ -1.4
SCN9A-201ENST00000303354 ZNF503-AS2A6NEH8 195 aa6.34□□□□□ -1.4
SCN9A-201ENST00000303354 TMEM144Q7Z5S9 345 aa6.34□□□□□ -1.4
SCN9A-201ENST00000303354 ATP6V0BQ99437 205 aa6.34□□□□□ -1.4
SCN9A-201ENST00000303354 SLC50A1Q9BRV3 221 aa6.34□□□□□ -1.4
SCN9A-201ENST00000303354 ZFC3H1O60293 1989 aaKnown RBP6.33□□□□□ -1.4
SCN9A-201ENST00000303354 SH2D1AO60880 128 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 NDUFB8O95169 186 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 Q6ZQT7 251 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 ORMDL3Q8N138 153 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 NXPH4O95158 308 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 IGFBP3P17936 291 aaPredicted RBP6.33□□□□□ -1.4
SCN9A-201ENST00000303354 SPRNQ5BIV9 151 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 LYZL1Q6UWQ5 148 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 OCC1Q8TAD7 63 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 SPXQ9BT56 116 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 NMBP08949 121 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 CRYGSP22914 178 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 DOCK6Q96HP0 2047 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 NAPSAO96009 420 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 SLC25A48Q6ZT89 311 aaKnown RBP6.33□□□□□ -1.4
SCN9A-201ENST00000303354 PFN2P35080 140 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 C8orf86Q6ZUL3 223 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 ZNF48Q96MX3 618 aaPredicted RBP6.33□□□□□ -1.4
SCN9A-201ENST00000303354 NEGR1Q7Z3B1 354 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 NR2C2APQ86WQ0 139 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 IGHV4-30-2A0A087WSY4 118 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 E9PQ18 207 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 AZU1P20160 251 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 CEACAM8P31997 349 aaPredicted RBP6.33□□□□□ -1.4
SCN9A-201ENST00000303354 TPSG1Q9NRR2 321 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 PTPRFP10586 1907 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 FRMPD3Q5JV73 1810 aa6.33□□□□□ -1.4
SCN9A-201ENST00000303354 SRRM5B3KS81 715 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 IGKV1-39P01597 117 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 IGKV1D-39P04432 117 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 STAG3L2P0CL84 134 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 RPL36AP83881 106 aaKnown RBP6.32□□□□□ -1.4
SCN9A-201ENST00000303354 TCTEX1D4Q5JR98 221 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 RPL36ALQ969Q0 106 aaKnown RBP6.32□□□□□ -1.4
SCN9A-201ENST00000303354 J3QW42 95 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 PKIAP61925 76 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 LINC00479Q96M42 142 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 CACNG8Q8WXS5 425 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 NUP214P35658 2090 aaPredicted RBP6.32□□□□□ -1.4
SCN9A-201ENST00000303354 K7ERU9 68 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 IGKV1-5P01602 117 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 SDHCQ99643 169 aaPredicted RBP6.32□□□□□ -1.4
SCN9A-201ENST00000303354 DERL1Q9BUN8 251 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 FNDC4Q9H6D8 234 aaPredicted RBP6.32□□□□□ -1.4
SCN9A-201ENST00000303354 SRSF1Q07955 248 aaKnown RBP eCLIP6.32□□□□□ -1.4
SCN9A-201ENST00000303354 PAPPA-AS1Q5QFB9 102 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 DLX4Q92988 240 aaPredicted RBP6.32□□□□□ -1.4
SCN9A-201ENST00000303354 CSTL1Q9H114 145 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 TRBV7-1A0A0A6YYK4 115 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 TRAV26-2A0A0B4J265 109 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 LY6G6EA0A0G2JKS1 128 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 VWC2LB2RUY7 222 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 RPL23P62829 140 aaKnown RBP6.32□□□□□ -1.4
SCN9A-201ENST00000303354 DEFB105AQ8NG35 78 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 GFI1Q99684 422 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 LAMTOR3Q9UHA4 124 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 U3KQA8 63 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 IZUMO1RA6ND01 250 aa6.32□□□□□ -1.4
SCN9A-201ENST00000303354 LINC00271P0C7V0 271 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 HEPN1Q6WQI6 88 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 MGST2Q99735 147 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 D6R8Y8 96 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 IGHV4-38-2P0DP08 117 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 DEFB113Q30KQ7 82 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 NHP2Q9NX24 153 aaKnown RBP6.31□□□□□ -1.4
SCN9A-201ENST00000303354 MT-ND6P03923 174 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 IGKV2D-24A0A075B6R9 120 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 ZNF98A6NK75 572 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 F6UB75 175 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 GAS1P54826 345 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 MINOS1Q5TGZ0 78 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 MINOS1-NBL1R4GNA1 71 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 IGHV4-4A0A075B6R2 117 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 SLURP1P55000 103 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 MST1LQ2TV78 715 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 ZNF362Q5T0B9 420 aaPredicted RBP6.31□□□□□ -1.4
SCN9A-201ENST00000303354 CD200R1LQ6Q8B3 271 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 CFHR2P36980 270 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 RNF126Q9BV68 326 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 ZNF561-AS1K7EIQ3 104 aa6.31□□□□□ -1.4
SCN9A-201ENST00000303354 NTF4P34130 210 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms