RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 A0A1W2PRE2 83 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 XKRY2A2RUG3 117 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 G3V318 75 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 CBLN1P23435 193 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 CNN1P51911 297 aaKnown RBP9.07□□□□□ -0.96
CUX1-202ENST00000292538 UBE2G1P62253 170 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 UNQ5815/PRO19632Q6UWF5 114 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 ZNF562Q6V9R5 426 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 C17orf77Q96MU5 243 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 PIMREGQ9BSJ6 248 aa9.07□□□□□ -0.96
CUX1-202ENST00000292538 CCDC168Q8NDH2 2452 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 IGHV3OR16-13A0A075B7E8 117 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 TRAV8-1A0A0A6YYK1 113 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 IGHV3-74A0A0B4J1X5 117 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 A0A1B0GUS0 222 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 ZNF705GA8MUZ8 300 aaPredicted RBP9.06□□□□□ -0.96
CUX1-202ENST00000292538 SRP14P37108 136 aaKnown RBP9.06□□□□□ -0.96
CUX1-202ENST00000292538 UBE2E1P51965 193 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 ZNF600Q6ZNG1 722 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 ZNF329Q86UD4 541 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 SLC25A39Q9BZJ4 359 aaPredicted RBP9.06□□□□□ -0.96
CUX1-202ENST00000292538 CENPVL3A0A0U1RRI6 287 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 PEX7O00628 323 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 NPFFO15130 113 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 NDUFB8O95169 186 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 BRS3P32247 399 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 IER3P46695 156 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 SSTP61278 116 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 NPBQ8NG41 125 aa9.06□□□□□ -0.96
CUX1-202ENST00000292538 GRIFINA4D1Z8 144 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 OVOL3O00110 214 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 HIST1H1BP16401 226 aaKnown RBP9.05□□□□□ -0.96
CUX1-202ENST00000292538 HOXA5P20719 270 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 IBA57Q5T440 356 aaKnown RBP9.05□□□□□ -0.96
CUX1-202ENST00000292538 MRPL54Q6P161 138 aaKnown RBP9.05□□□□□ -0.96
CUX1-202ENST00000292538 IGHV7-81A0A0B4J1V7 117 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 IFITM10A6NMD0 228 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 NDUFA3O95167 84 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 PAX2Q02962 417 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 MINOS1Q5TGZ0 78 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 Q9H3A6 140 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 GAR1Q9NY12 217 aaKnown RBP9.05□□□□□ -0.96
CUX1-202ENST00000292538 FBXL7Q9UJT9 491 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 MINOS1-NBL1R4GNA1 71 aa9.05□□□□□ -0.96
CUX1-202ENST00000292538 IGHV3-66A0A0C4DH42 116 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 TMEM8BA6NDV4 472 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 CDX1P47902 265 aaPredicted RBP9.04□□□□□ -0.96
CUX1-202ENST00000292538 C21orf62-AS1Q17RA5 79 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 C11orf52Q96A22 123 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 FANCD2OSQ96PS1 177 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 IGHV3-49A0A0A0MS15 119 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 ATP6V0E1O15342 81 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 RPEL1Q2QD12 228 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 KIAA1644Q3SXP7 199 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 Q8N9W7 124 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 CMTM2Q8TAZ6 248 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 C7orf69Q9H7B7 122 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 C21orf62Q9NYP8 219 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 DOPEY2Q9Y3R5 2298 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 ANKRD17O75179 2603 aaKnown RBP9.04□□□□□ -0.96
CUX1-202ENST00000292538 GGCTO75223 188 aaKnown RBP9.04□□□□□ -0.96
CUX1-202ENST00000292538 IGHV4-38-2P0DP08 117 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 GPR183P32249 361 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 MFAP4P55083 255 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 RNF125Q96EQ8 232 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 C1RLQ9NZP8 487 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 EPDR1Q9UM22 224 aa9.04□□□□□ -0.96
CUX1-202ENST00000292538 KLF2Q9Y5W3 355 aaPredicted RBP9.04□□□□□ -0.96
CUX1-202ENST00000292538 AMY1AP04745 511 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 IGFL4Q6B9Z1 124 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 OR1L6Q8NGR2 347 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 ZNF586Q9NXT0 402 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 FBN2P35556 2912 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 C9JCJ5 164 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 ZNF207O43670 478 aaKnown RBP9.03□□□□□ -0.96
CUX1-202ENST00000292538 USF2Q15853 346 aaPredicted RBP9.03□□□□□ -0.96
CUX1-202ENST00000292538 C15orf32Q32M92 178 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 GOLT1AQ6ZVE7 132 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 STXBP6Q8NFX7 210 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 IL36BQ9NZH7 164 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 THYN1Q9P016 225 aa9.03□□□□□ -0.96
CUX1-202ENST00000292538 CD99P14209 185 aa9.02□□□□□ -0.96
CUX1-202ENST00000292538 RPL15P61313 204 aaKnown RBP9.02□□□□□ -0.96
CUX1-202ENST00000292538 CDPF1Q6NVV7 123 aa9.02□□□□□ -0.96
CUX1-202ENST00000292538 PRNTQ86SH4 94 aa9.02□□□□□ -0.96
CUX1-202ENST00000292538 V9GYV3 84 aa9.02□□□□□ -0.96
CUX1-202ENST00000292538 SNURFLB1AK76 121 aa9.02□□□□□ -0.97
CUX1-202ENST00000292538 S100A8P05109 93 aa9.02□□□□□ -0.97
CUX1-202ENST00000292538 GP9P14770 177 aa9.02□□□□□ -0.97
CUX1-202ENST00000292538 Q71RC1 249 aaPredicted RBP9.02□□□□□ -0.97
CUX1-202ENST00000292538 HIST3H2BBQ8N257 126 aa9.02□□□□□ -0.97
CUX1-202ENST00000292538 ZNF491Q8N8L2 437 aa9.02□□□□□ -0.97
CUX1-202ENST00000292538 PYGO2Q9BRQ0 406 aa9.02□□□□□ -0.97
CUX1-202ENST00000292538 CHRDL1Q9BU40 450 aa9.02□□□□□ -0.97
CUX1-202ENST00000292538 SELENOKQ9Y6D0 94 aa9.02□□□□□ -0.97
CUX1-202ENST00000292538 ABCA2Q9BZC7 2435 aa9.02□□□□□ -0.97
CUX1-202ENST00000292538 M0R3E3 92 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 IGLV2-8P01709 118 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 CLEC3BP05452 202 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 EGR2P11161 476 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms