RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PQLC2Q6ZP29 291 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 RNF125Q96EQ8 232 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 LINC00479Q96M42 142 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 OR5B12Q96R08 314 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 SMR3AQ99954 134 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 RPH3ALQ9UNE2 315 aa12.85□□□□□ -0.35
USP4-201ENST00000265560 ZNF207O43670 478 aaKnown RBP12.84□□□□□ -0.35
USP4-201ENST00000265560 HIST2H2BDQ6DRA6 164 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 SLC25A39Q9BZJ4 359 aaPredicted RBP12.84□□□□□ -0.35
USP4-201ENST00000265560 SELENOKQ9Y6D0 94 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 IGHV3-66A0A0C4DH42 116 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 TRGV3P03979 118 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 C17orf77Q96MU5 243 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 PITPNC1Q9UKF7 332 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 HIVEP1P15822 2718 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 ANK3Q12955 4377 aaKnown RBP12.84□□□□□ -0.35
USP4-201ENST00000265560 ELOA3CA0A087WX78 387 aaPredicted RBP12.84□□□□□ -0.35
USP4-201ENST00000265560 TRBV12-3P01733 135 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 PF4V1P10720 104 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 PMS2P11Q13670 270 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 ZNF343Q6P1L6 599 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 CCDC140Q96MF4 163 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 C19orf24Q9BVV8 132 aa12.84□□□□□ -0.35
USP4-201ENST00000265560 TRBV20OR9-2A0A075B6H5 130 aa12.83□□□□□ -0.36
USP4-201ENST00000265560 FXYD5Q96DB9 178 aa12.83□□□□□ -0.36
USP4-201ENST00000265560 MRPL32Q9BYC8 188 aaKnown RBP12.83□□□□□ -0.36
USP4-201ENST00000265560 SDF2L1Q9HCN8 221 aa12.83□□□□□ -0.36
USP4-201ENST00000265560 TPPP2P59282 170 aa12.83□□□□□ -0.36
USP4-201ENST00000265560 IGHG2P01859 326 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 GNG5P63218 68 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 TMEM241Q24JQ0 296 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 TMEM167BQ9NRX6 74 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 JMJD1CQ15652 2540 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 NIPBLQ6KC79 2804 aaeCLIP12.82□□□□□ -0.36
USP4-201ENST00000265560 FAM24BQ8N5W8 94 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 TMEM250H0YL14 139 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 RPL15P61313 204 aaKnown RBP12.82□□□□□ -0.36
USP4-201ENST00000265560 ZNF600Q6ZNG1 722 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 NECAP1Q8NC96 275 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 ZNF502Q8TBZ5 544 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 ELOVL1Q9BW60 279 aa12.82□□□□□ -0.36
USP4-201ENST00000265560 SORL1Q92673 2214 aa12.81□□□□□ -0.36
USP4-201ENST00000265560 TRBV9A0A0B4J1U6 114 aa12.81□□□□□ -0.36
USP4-201ENST00000265560 TRAV34A0A0B4J273 112 aa12.81□□□□□ -0.36
USP4-201ENST00000265560 FSHBP01225 129 aa12.81□□□□□ -0.36
USP4-201ENST00000265560 Q8WTZ3 238 aa12.81□□□□□ -0.36
USP4-201ENST00000265560 FN1P02751 2386 aaKnown RBP12.81□□□□□ -0.36
USP4-201ENST00000265560 TOMM40O96008 361 aa12.81□□□□□ -0.36
USP4-201ENST00000265560 SIGLECL1Q8N7X8 197 aa12.81□□□□□ -0.36
USP4-201ENST00000265560 NHLRC2Q8NBF2 726 aa12.81□□□□□ -0.36
USP4-201ENST00000265560 PDE6DO43924 150 aa12.8□□□□□ -0.36
USP4-201ENST00000265560 RPL23P62829 140 aaKnown RBP12.8□□□□□ -0.36
USP4-201ENST00000265560 RNF212Q495C1 297 aa12.8□□□□□ -0.36
USP4-201ENST00000265560 MRPL27Q9P0M9 148 aaKnown RBP12.8□□□□□ -0.36
USP4-201ENST00000265560 NBEAP1P0C6P0 100 aa12.8□□□□□ -0.36
USP4-201ENST00000265560 RPL35P42766 123 aaKnown RBP12.79□□□□□ -0.36
USP4-201ENST00000265560 ATP5G2Q06055 141 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 Q71RC1 249 aaPredicted RBP12.79□□□□□ -0.36
USP4-201ENST00000265560 RNF2Q99496 336 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 ASCL2Q99929 193 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 NAT8Q9UHE5 227 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 OR2C1O95371 312 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 GP9P14770 177 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 ATF4P18848 351 aaPredicted RBP12.79□□□□□ -0.36
USP4-201ENST00000265560 PPIFP30405 207 aaKnown RBP12.79□□□□□ -0.36
USP4-201ENST00000265560 Q6YL49 198 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 EXOC3-AS1Q8N2X6 119 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 YAE1D1Q9NRH1 226 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 C19orf54Q5BKX5 351 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 TOMM20LQ6UXN7 152 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 SMCO4Q9NRQ5 59 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 ZNF586Q9NXT0 402 aa12.79□□□□□ -0.36
USP4-201ENST00000265560 PGPA6NDG6 321 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 IGF1P05019 195 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 HIST1H1BP16401 226 aaKnown RBP12.78□□□□□ -0.36
USP4-201ENST00000265560 SRP14P37108 136 aaKnown RBP12.78□□□□□ -0.36
USP4-201ENST00000265560 PLP1P60201 277 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 IGFL4Q6B9Z1 124 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 ZNF414Q96IQ9 312 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 TRAV30A0A087WSZ9 112 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 ZNF98A6NK75 572 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 AP4M1O00189 453 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 YPEL3P61236 119 aaPredicted RBP12.78□□□□□ -0.36
USP4-201ENST00000265560 RHEBQ15382 184 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 VPREB3Q9UKI3 123 aa12.78□□□□□ -0.36
USP4-201ENST00000265560 WI2-2373I1.2A0A1W2PRP0 233 aa12.77□□□□□ -0.36
USP4-201ENST00000265560 OR5I1Q13606 314 aa12.77□□□□□ -0.36
USP4-201ENST00000265560 OCC1Q8TAD7 63 aa12.77□□□□□ -0.36
USP4-201ENST00000265560 M0QZK8 103 aa12.77□□□□□ -0.37
USP4-201ENST00000265560 APOHP02749 345 aaPredicted RBP12.77□□□□□ -0.37
USP4-201ENST00000265560 KRTAP1-1Q07627 177 aa12.77□□□□□ -0.37
USP4-201ENST00000265560 VN1R17PQ8TDU5 208 aa12.77□□□□□ -0.37
USP4-201ENST00000265560 EEF1AKMT3Q96AZ1 226 aa12.77□□□□□ -0.37
USP4-201ENST00000265560 SHANK2-AS3Q9BTD1 123 aa12.77□□□□□ -0.37
USP4-201ENST00000265560 TEP1Q99973 2627 aaKnown RBP12.77□□□□□ -0.37
USP4-201ENST00000265560 COLCA2A8K830 154 aa12.76□□□□□ -0.37
USP4-201ENST00000265560 SLC17A3O00476 420 aa12.76□□□□□ -0.37
USP4-201ENST00000265560 FABP1P07148 127 aa12.76□□□□□ -0.37
USP4-201ENST00000265560 F6UZH7 168 aa12.76□□□□□ -0.37
USP4-201ENST00000265560 SLC25A5P05141 298 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms