RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 RCC1P18754 421 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-218ENST00000640036 PQLC2Q6ZP29 291 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 UBE2E2Q96LR5 201 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 SRD5A3Q9H8P0 318 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 ELF5Q9UKW6 265 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-218ENST00000640036 U3KQA8 63 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 TMEM189A5PLL7 270 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 VWC2LB2RUY7 222 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 APOMO95445 188 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 CRYBA2P53672 197 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 ACTL10Q5JWF8 245 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 IGFL2Q6UWQ7 119 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 C10orf105Q8TEF2 133 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 FRRS1LQ9P0K9 344 aa4.15□□□□□ -1.74
SCN1A-218ENST00000640036 C11orf87Q6NUJ2 197 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 RPRMLQ8N4K4 120 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 OR5AN1Q8NGI8 311 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 MRPL20Q9BYC9 149 aaKnown RBP4.15□□□□□ -1.75
SCN1A-218ENST00000640036 SRRM5B3KS81 715 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 DIRC3C9JPN6 131 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 HOXA5P20719 270 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 P2RY1P47900 373 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 NHLRC3Q5JS37 347 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 HSF4Q9ULV5 492 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 CAMPP49913 170 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 ATXN8Q156A1 80 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 C15orf32Q32M92 178 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM200BQ69YZ2 307 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 H1FOOQ8IZA3 346 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-218ENST00000640036 ARL6IP6Q8N6S5 226 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 OR10G4Q8NGN3 311 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 OR10G9Q8NGN4 311 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 OR10G7Q8NGN6 311 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 PPP1R1CQ8WVI7 109 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 HDHD3Q9BSH5 251 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-218ENST00000640036 DNAJC4Q9NNZ3 241 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 S4R3C0 116 aa4.15□□□□□ -1.75
SCN1A-218ENST00000640036 TRAV9-1A0A075B6T8 112 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 TMSB15BA0A087X1C1 80 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 IGHV4-61A0A0C4DH41 118 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 NDUFC2O95298 119 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF25P17030 456 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-218ENST00000640036 C5orf64Q2M2E5 130 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 CTXND1A0A1B0GTU2 59 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 RBFOX3A6NFN3 312 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 K7EM74 188 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 YPEL1O60688 119 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 OR10D4PQ8NGN7 298 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 YPEL2Q96QA6 119 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 LPAR5Q9H1C0 372 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 MARCH11A6NNE9 402 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 LEPROTL1O95214 131 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 WFDC11Q8NEX6 87 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 RARRES2Q99969 163 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 SLC50A1Q9BRV3 221 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 MRPL32Q9BYC8 188 aaKnown RBP4.14□□□□□ -1.75
SCN1A-218ENST00000640036 GPR132Q9UNW8 380 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-218ENST00000640036 CD7P09564 240 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 SEC61GP60059 68 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 MEF2BQ02080 365 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-218ENST00000640036 USP9YO00507 2555 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM50AO95807 157 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 IGHV2-5P01817 119 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 C12orf73Q69YU5 71 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF324BQ6AW86 544 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM144Q7Z5S9 345 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM256Q8N2U0 113 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 ORAOV1Q8WV07 137 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 CITED2Q99967 270 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-218ENST00000640036 JUNBP17275 347 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-218ENST00000640036 FBLN7Q53RD9 439 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 MPV17L2Q567V2 206 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 TMEM42Q69YG0 159 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 ZFAND6Q6FIF0 208 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 OR2C3Q8N628 320 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 NPIPB3Q92617 1050 aa4.14□□□□□ -1.75
SCN1A-218ENST00000640036 SPANXB1Q9NS25 103 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-218ENST00000640036 TRGV1A0A0A0MS02 117 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 TRAV21A0A0B4J279 112 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 EFNA2O43921 213 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 OR5C1Q8NGR4 320 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 CENPVL1A0A0U1RR11 272 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 FOXI3A8MTJ6 420 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 NAT1P18440 290 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 GRNP28799 593 aaKnown RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 MYCNOSP40205 109 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 TCTEX1D4Q5JR98 221 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 PIFOQ8TCI5 191 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 RNASEH2CQ8TDP1 164 aaKnown RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 PARD6GQ9BYG4 376 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 IGLV1-36A0A0B4J1U3 117 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 RNASE4P34096 147 aaKnown RBP4.13□□□□□ -1.75
SCN1A-218ENST00000640036 ZNF841Q6ZN19 808 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 HSPB7Q9UBY9 170 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 TCF19Q9Y242 345 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 COL4A6Q14031 1691 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 BUB1B-PAK6H3BSN5 160 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 IGHV4-59P01825 116 aa4.13□□□□□ -1.75
SCN1A-218ENST00000640036 FABP5Q01469 135 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms