RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 EEF1AKMT3Q96AZ1 226 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 TRGV9Q99603 122 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 SMIM3Q9BZL3 60 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 AURKAIP1Q9NWT8 199 aaPredicted RBP7.55□□□□□ -1.2
CLN3-261ENST00000637686 BOLA1Q9Y3E2 137 aa7.55□□□□□ -1.2
CLN3-261ENST00000637686 UBE2L5PA0A1B0GUS4 154 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 UMAD1C9J7I0 102 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 PPP5D1E7EU14 171 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 WIPF1O43516 503 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 CLN5O75503 358 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 IFNA7P01567 189 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 SPP1P10451 314 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 FGF7P21781 194 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 RPL29P47914 159 aaKnown RBP7.54□□□□□ -1.2
CLN3-261ENST00000637686 RAB5CP51148 216 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 SYNJ2BPP57105 145 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 AKR1C1Q04828 323 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 RPEL1Q2QD12 228 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 ACSM6Q6P461 480 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 BTNL8Q6UX41 500 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 CLEC19AQ6UXS0 136 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 ZNF767PQ75MW2 155 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 ZNF502Q8TBZ5 544 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 LRRC20Q8TCA0 184 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 SCARB1Q8WTV0 552 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 CCDC140Q96MF4 163 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 NPCDR1Q9BY65 106 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 C21orf62Q9NYP8 219 aa7.54□□□□□ -1.2
CLN3-261ENST00000637686 IGHV3-21A0A0B4J1V1 117 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 SMCO3A2RU48 225 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 RGS13O14921 159 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 GGCTO75223 188 aaKnown RBP7.53□□□□□ -1.2
CLN3-261ENST00000637686 SAP30O75446 220 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 MBP02144 154 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 ATP6V0CP27449 155 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 INSL3P51460 131 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 RND2P52198 227 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 YPEL3P61236 119 aaPredicted RBP7.53□□□□□ -1.2
CLN3-261ENST00000637686 PXDC1Q5TGL8 231 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 SPSB3Q6PJ21 355 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 TEX261Q6UWH6 196 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 DPPA3Q6W0C5 159 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 REC114Q7Z4M0 266 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 ZNF709Q8N972 641 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 ELOVL1Q9BW60 279 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 GGTLC1Q9BX51 225 aa7.53□□□□□ -1.2
CLN3-261ENST00000637686 DNAH3Q8TD57 4116 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 IGKV1D-37A0A075B6S9 117 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 IGKV1OR2-108A0A075B7D4 117 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 F8W735 103 aaPredicted RBP7.52□□□□□ -1.21
CLN3-261ENST00000637686 AGPAT2O15120 278 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 OR2C1O95371 312 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 CLEC3BP05452 202 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 IGLC1P0CG04 106 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 OR10J1P30954 320 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 GPR183P32249 361 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 ARL3P36405 182 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 CAMLGP49069 296 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 PLP1P60201 277 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 PRR20EP86478 221 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 PRR20CP86479 221 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 PRR20DP86480 221 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 PRR20BP86481 221 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 PRR20AP86496 221 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 ZNF680Q8NEM1 530 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 OR9G4Q8NGQ1 327 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 MRAPQ8TCY5 172 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 NPIPB3Q92617 1050 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 ACY3Q96HD9 319 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 MGST2Q99735 147 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 SLC45A2Q9UMX9 530 aa7.52□□□□□ -1.21
CLN3-261ENST00000637686 WI2-2373I1.2A0A1W2PRP0 233 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 ZFP92A6NM28 416 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 K7EIL1 84 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 TOMM40O96008 361 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 IGKV1-17P01599 117 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 SULT1A2P50226 295 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 MLANAQ16655 118 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 IL34Q6ZMJ4 242 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 CYP2G1PQ6ZSU1 146 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 HSD17B11Q8NBQ5 300 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 SLC25A32Q9H2D1 315 aa7.51□□□□□ -1.21
CLN3-261ENST00000637686 MRPL36Q9P0J6 103 aaKnown RBP7.51□□□□□ -1.21
CLN3-261ENST00000637686 ZMAT5Q9UDW3 170 aaKnown RBP7.51□□□□□ -1.21
CLN3-261ENST00000637686 OR2T8A6NH00 312 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 NUPL2O15504 423 aaKnown RBP7.5□□□□□ -1.21
CLN3-261ENST00000637686 TGOLN2O43493 480 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 GNG7O60262 68 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 IGHV3-48P01763 117 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 CSN3P07498 182 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 S100A7P31151 101 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 IFITM2Q01629 132 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 RELQ04864 619 aaPredicted RBP7.5□□□□□ -1.21
CLN3-261ENST00000637686 Q56UQ5 140 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 Q6ZRG5 221 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 S100A7AQ86SG5 101 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 GPHB5Q86YW7 130 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 BPIFCQ8NFQ6 507 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 RNF141Q8WVD5 230 aa7.5□□□□□ -1.21
CLN3-261ENST00000637686 TMED6Q8WW62 240 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms