RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 UHRF2Q96PU4 802 aa13.17□□□□□ -0.3
CLN3-252ENST00000636907 TRAV30A0A087WSZ9 112 aa13.16□□□□□ -0.3
CLN3-252ENST00000636907 TRAV5A0A0B4J249 113 aa13.16□□□□□ -0.3
CLN3-252ENST00000636907 PAGE4O60829 102 aa13.16□□□□□ -0.3
CLN3-252ENST00000636907 SCO1O75880 301 aa13.16□□□□□ -0.3
CLN3-252ENST00000636907 RD3LP0DJH9 198 aa13.16□□□□□ -0.3
CLN3-252ENST00000636907 C8orf88P0DMB2 117 aa13.16□□□□□ -0.3
CLN3-252ENST00000636907 FCGR2BP31994 310 aaPredicted RBP13.16□□□□□ -0.3
CLN3-252ENST00000636907 PLP1P60201 277 aa13.16□□□□□ -0.3
CLN3-252ENST00000636907 CYB561D1Q8N8Q1 229 aa13.16□□□□□ -0.3
CLN3-252ENST00000636907 ZNF503Q96F45 646 aa13.16□□□□□ -0.3
CLN3-252ENST00000636907 ELOA3CA0A087WX78 387 aaPredicted RBP13.15□□□□□ -0.3
CLN3-252ENST00000636907 AP4M1O00189 453 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 TOMM40O96008 361 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 FABP1P07148 127 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 TAGLN2P37802 199 aaKnown RBP13.15□□□□□ -0.3
CLN3-252ENST00000636907 CEBPGP53567 150 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 TAS2R45P59539 299 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 CD81P60033 236 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 UBE2G2P60604 165 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 LYZP61626 148 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 MEF2BQ02080 365 aaPredicted RBP13.15□□□□□ -0.3
CLN3-252ENST00000636907 ATRAIDQ6UW56 229 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 LINC00305Q7Z4B0 112 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 NECAP1Q8NC96 275 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 ZNF502Q8TBZ5 544 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 FAM167A-AS1Q96KT0 104 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 SLC25A2Q9BXI2 301 aa13.15□□□□□ -0.3
CLN3-252ENST00000636907 OR2T8A6NH00 312 aa13.15□□□□□ -0.31
CLN3-252ENST00000636907 HYPMO75409 117 aa13.15□□□□□ -0.31
CLN3-252ENST00000636907 PPIFP30405 207 aaKnown RBP13.15□□□□□ -0.31
CLN3-252ENST00000636907 SVBPQ8N300 66 aa13.15□□□□□ -0.31
CLN3-252ENST00000636907 SIGLECL1Q8N7X8 197 aa13.15□□□□□ -0.31
CLN3-252ENST00000636907 TXN2Q99757 166 aa13.15□□□□□ -0.31
CLN3-252ENST00000636907 OR7C2O60412 319 aa13.14□□□□□ -0.31
CLN3-252ENST00000636907 YPEL3P61236 119 aaPredicted RBP13.14□□□□□ -0.31
CLN3-252ENST00000636907 SOHLH1Q5JUK2 328 aa13.14□□□□□ -0.31
CLN3-252ENST00000636907 PQLC2Q6ZP29 291 aa13.14□□□□□ -0.31
CLN3-252ENST00000636907 OR5AU1Q8NGC0 362 aa13.14□□□□□ -0.31
CLN3-252ENST00000636907 OR51G1Q8NGK1 321 aa13.14□□□□□ -0.31
CLN3-252ENST00000636907 YAE1D1Q9NRH1 226 aa13.14□□□□□ -0.31
CLN3-252ENST00000636907 CTSGP08311 255 aa13.13□□□□□ -0.31
CLN3-252ENST00000636907 SRP14P37108 136 aaKnown RBP13.13□□□□□ -0.31
CLN3-252ENST00000636907 TMEM95Q3KNT9 176 aa13.13□□□□□ -0.31
CLN3-252ENST00000636907 OR4F5Q8NH21 305 aa13.13□□□□□ -0.31
CLN3-252ENST00000636907 OR4F4Q96R69 305 aa13.13□□□□□ -0.31
CLN3-252ENST00000636907 MXRA5Q9NR99 2828 aa13.13□□□□□ -0.31
CLN3-252ENST00000636907 C11orf94C9JXX5 98 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 OR10J4P0C629 311 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 GPR183P32249 361 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 ADMP35318 185 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 KIAA0141Q14154 515 aaPredicted RBP13.12□□□□□ -0.31
CLN3-252ENST00000636907 CST9LP1Q5W188 147 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 ZNF491Q8N8L2 437 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 CCDC140Q96MF4 163 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 CHRDL1Q9BU40 450 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 TMEM167BQ9NRX6 74 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 ZNF580Q9UK33 172 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 HIGD1AQ9Y241 93 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 YTHDF2Q9Y5A9 579 aaKnown RBP13.12□□□□□ -0.31
CLN3-252ENST00000636907 FAM223BA6NKX1 122 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 TRGV3P03979 118 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 ATP5G3P48201 142 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 CFHR3Q02985 330 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 ATP5G2Q06055 141 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 FAM90A2PQ658T7 463 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 FAM223AQ8IWN6 122 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 EEF1AKMT3Q96AZ1 226 aa13.12□□□□□ -0.31
CLN3-252ENST00000636907 MRPL27Q9P0M9 148 aaKnown RBP13.12□□□□□ -0.31
CLN3-252ENST00000636907 WI2-2373I1.2A0A1W2PRP0 233 aa13.11□□□□□ -0.31
CLN3-252ENST00000636907 H3BUA1 57 aa13.11□□□□□ -0.31
CLN3-252ENST00000636907 BRI3O95415 125 aa13.11□□□□□ -0.31
CLN3-252ENST00000636907 IL4P05112 153 aa13.11□□□□□ -0.31
CLN3-252ENST00000636907 SUN5Q8TC36 379 aa13.11□□□□□ -0.31
CLN3-252ENST00000636907 Q8WTZ3 238 aa13.11□□□□□ -0.31
CLN3-252ENST00000636907 RNF125Q96EQ8 232 aa13.11□□□□□ -0.31
CLN3-252ENST00000636907 TLN2Q9Y4G6 2542 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 FAM74A7A6NL05 159 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 NUPL2O15504 423 aaKnown RBP13.1□□□□□ -0.31
CLN3-252ENST00000636907 NDUFS6O75380 124 aaKnown RBP13.1□□□□□ -0.31
CLN3-252ENST00000636907 SCGB2A1O75556 95 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 SNAPINO95295 136 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 OR2C1O95371 312 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 CLEC3BP05452 202 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 PYYP10082 97 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 TPPP2P59282 170 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 CLEC19AQ6UXS0 136 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 ZNF414Q96IQ9 312 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 DUX5Q96PT3 197 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 PAXXQ9BUH6 204 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 SLC25A39Q9BZJ4 359 aaPredicted RBP13.1□□□□□ -0.31
CLN3-252ENST00000636907 NKX6-2Q9C056 277 aaPredicted RBP13.1□□□□□ -0.31
CLN3-252ENST00000636907 OR51M1Q9H341 326 aa13.1□□□□□ -0.31
CLN3-252ENST00000636907 TRBV7-1A0A0A6YYK4 115 aa13.09□□□□□ -0.31
CLN3-252ENST00000636907 TMEM250H0YL14 139 aa13.09□□□□□ -0.31
CLN3-252ENST00000636907 IGLV1-40P01703 118 aa13.09□□□□□ -0.31
CLN3-252ENST00000636907 UBE2L3P68036 154 aaKnown RBP13.09□□□□□ -0.31
CLN3-252ENST00000636907 CLRN3Q8NCR9 226 aa13.09□□□□□ -0.31
CLN3-252ENST00000636907 TGOLN2O43493 480 aa13.08□□□□□ -0.31
CLN3-252ENST00000636907 PF4V1P10720 104 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms