RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 PPIFP30405 207 aaKnown RBP8.27□□□□□ -1.09
CLN3-248ENST00000636355 CCL20P78556 96 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 CFHR3Q02985 330 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 ZNF90Q03938 601 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 ICAM4Q14773 271 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 C15orf32Q32M92 178 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 BCL6BQ8N143 479 aaPredicted RBP8.27□□□□□ -1.09
CLN3-248ENST00000636355 Q8N2B8 174 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 NKX6-2Q9C056 277 aaPredicted RBP8.27□□□□□ -1.09
CLN3-248ENST00000636355 PRSS22Q9GZN4 317 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 CELSR1Q9NYQ6 3014 aa8.27□□□□□ -1.09
CLN3-248ENST00000636355 F8W036 122 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 F8W735 103 aaPredicted RBP8.26□□□□□ -1.09
CLN3-248ENST00000636355 SMAD7O15105 426 aaKnown RBP8.26□□□□□ -1.09
CLN3-248ENST00000636355 NUPL2O15504 423 aaKnown RBP8.26□□□□□ -1.09
CLN3-248ENST00000636355 OR2J3O76001 311 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 IGLV1-40P01703 118 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 RD3LP0DJH9 198 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 PSG1P11464 419 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 SRP14P37108 136 aaKnown RBP8.26□□□□□ -1.09
CLN3-248ENST00000636355 FGF8P55075 233 aaPredicted RBP8.26□□□□□ -1.09
CLN3-248ENST00000636355 SRSF3P84103 164 aaKnown RBP8.26□□□□□ -1.09
CLN3-248ENST00000636355 Q56UQ5 140 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 OR5T1Q8NG75 326 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 TMEM37Q8WXS4 190 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 RNF125Q96EQ8 232 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 HIGD1AQ9Y241 93 aa8.26□□□□□ -1.09
CLN3-248ENST00000636355 NBPF19A0A087WUL8 3843 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 A0A0G2JLM5 398 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 A0A1B0GV50 99 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 WI2-2373I1.2A0A1W2PRP0 233 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 F6UZH7 168 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 G3V318 75 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 NDUFB8O95169 186 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 SNAPINO95295 136 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 IGHG4P01861 327 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 SRP19P09132 144 aaKnown RBP8.25□□□□□ -1.09
CLN3-248ENST00000636355 FOSL1P15407 271 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 ADCYAP1P18509 176 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 RAB9AP51151 201 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 RELQ04864 619 aaPredicted RBP8.25□□□□□ -1.09
CLN3-248ENST00000636355 HAGHQ16775 308 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 TIGITQ495A1 244 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 FAM74A3Q4VXF1 159 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 C9orf152Q5JTZ5 239 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 ZNF600Q6ZNG1 722 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 LINC00305Q7Z4B0 112 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 Q8WTZ3 238 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 TMEM231Q9H6L2 316 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 ZNF355PQ9NSJ1 428 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 TMEM14CQ9P0S9 112 aa8.25□□□□□ -1.09
CLN3-248ENST00000636355 SOX21Q9Y651 276 aaPredicted RBP8.25□□□□□ -1.09
CLN3-248ENST00000636355 MXRA5Q9NR99 2828 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 C2CD3Q4AC94 2353 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 A0A1W2PRE2 83 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 BMPR1BO00238 502 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 HOXA3O43365 443 aaPredicted RBP8.24□□□□□ -1.09
CLN3-248ENST00000636355 OR7C2O60412 319 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 IGHV3-48P01763 117 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 GATA2P23769 480 aaPredicted RBP8.24□□□□□ -1.09
CLN3-248ENST00000636355 UBE2L3P68036 154 aaKnown RBP8.24□□□□□ -1.09
CLN3-248ENST00000636355 SLC35B1P78383 322 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 ATP5G2Q06055 141 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 SOHLH1Q5JUK2 328 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 MIR17HGQ75NE6 70 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 OR5AU1Q8NGC0 362 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 OR1B1Q8NGR6 318 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 FAM167A-AS1Q96KT0 104 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 CCDC140Q96MF4 163 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 SLC25A2Q9BXI2 301 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 MRPL27Q9P0M9 148 aaKnown RBP8.24□□□□□ -1.09
CLN3-248ENST00000636355 CDC42EP3Q9UKI2 254 aa8.24□□□□□ -1.09
CLN3-248ENST00000636355 SONP18583 2426 aaKnown RBP8.24□□□□□ -1.09
CLN3-248ENST00000636355 IGHV3-21A0A0B4J1V1 117 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 LINC01548A6NM66 108 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 C9JQL5 133 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 C11orf94C9JXX5 98 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 H3BRN7 92 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 HMGB3O15347 200 aaKnown RBP8.23□□□□□ -1.09
CLN3-248ENST00000636355 TGOLN2O43493 480 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 APOC3P02656 99 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 TRGV3P03979 118 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 CTSGP08311 255 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 LYZP61626 148 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 BLCAPP62952 87 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 PNRC1Q12796 327 aaPredicted RBP8.23□□□□□ -1.09
CLN3-248ENST00000636355 SPATA31B1PQ5VZV4 182 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 PATE2Q6UY27 113 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 IQCF2Q8IXL9 164 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 SIGLECL1Q8N7X8 197 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 ZNF491Q8N8L2 437 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 RNF152Q8N8N0 203 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 CYB561D1Q8N8Q1 229 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 RXFP4Q8TDU9 374 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 C11orf52Q96A22 123 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 RPUSD4Q96CM3 377 aaKnown RBP8.23□□□□□ -1.09
CLN3-248ENST00000636355 UHRF2Q96PU4 802 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 RARRES2Q99969 163 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 SHANK2-AS3Q9BTD1 123 aa8.23□□□□□ -1.09
CLN3-248ENST00000636355 ZNF702PQ9H963 129 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms