RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 C8orf88P0DMB2 117 aa13.42□□□□□ -0.26
CLN3-247ENST00000636351 DLK1P80370 383 aa13.42□□□□□ -0.26
CLN3-247ENST00000636351 OXA1LQ15070 435 aa13.42□□□□□ -0.26
CLN3-247ENST00000636351 RBPMS2Q6ZRY4 209 aaKnown RBP13.42□□□□□ -0.26
CLN3-247ENST00000636351 NARS2Q96I59 477 aaKnown RBP13.42□□□□□ -0.26
CLN3-247ENST00000636351 FAM24AA6NFZ4 105 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 CST7O76096 145 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 SCAF4O95104 1147 aaKnown RBP13.41□□□□□ -0.26
CLN3-247ENST00000636351 IL4P05112 153 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 PET100P0DJ07 73 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 GTSCR1Q86UQ5 136 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 STX12Q86Y82 276 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 TMEM61Q8N0U2 210 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 TMEM217Q8N7C4 229 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 PPP1R1CQ8WVI7 109 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 WDR89Q96FK6 387 aaPredicted RBP13.41□□□□□ -0.26
CLN3-247ENST00000636351 RHPN1-AS1Q9BWJ2 59 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 C11orf1Q9H5F2 150 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 LYRM2Q9NU23 88 aaPredicted RBP13.41□□□□□ -0.26
CLN3-247ENST00000636351 SMPXQ9UHP9 88 aa13.41□□□□□ -0.26
CLN3-247ENST00000636351 IGKV1D-37A0A075B6S9 117 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 IGHV3-66A0A0C4DH42 116 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 PMS2P5A8MQ11 134 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 PSG1P11464 419 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 LYL1P12980 280 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 NPPCP23582 126 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 ZNF90Q03938 601 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 SLC38A11Q08AI6 406 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 OR2F1Q13607 317 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 FCN2Q15485 313 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 LAMTOR1Q6IAA8 161 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 LILRB2Q8N423 598 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 THAP8Q8NA92 274 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 OR51G1Q8NGK1 321 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 TRGV9Q99603 122 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 PBDC1Q9BVG4 233 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 ZMAT4Q9H898 229 aa13.4□□□□□ -0.26
CLN3-247ENST00000636351 IGSF23A1L1A6 192 aa13.39□□□□□ -0.27
CLN3-247ENST00000636351 E5RGE8 158 aa13.39□□□□□ -0.27
CLN3-247ENST00000636351 CHEK1O14757 476 aa13.39□□□□□ -0.27
CLN3-247ENST00000636351 LYZP61626 148 aa13.39□□□□□ -0.27
CLN3-247ENST00000636351 ARL16Q0P5N6 197 aa13.39□□□□□ -0.27
CLN3-247ENST00000636351 TMEM144Q7Z5S9 345 aa13.39□□□□□ -0.27
CLN3-247ENST00000636351 ST8SIA2Q92186 375 aa13.39□□□□□ -0.27
CLN3-247ENST00000636351 TMEM231Q9H6L2 316 aa13.39□□□□□ -0.27
CLN3-247ENST00000636351 OR5AC2Q9NZP5 309 aa13.39□□□□□ -0.27
CLN3-247ENST00000636351 IGKV1OR2-108A0A075B7D4 117 aa13.38□□□□□ -0.27
CLN3-247ENST00000636351 HNRNPCP07910 306 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLN3-247ENST00000636351 CXCL3P19876 107 aa13.38□□□□□ -0.27
CLN3-247ENST00000636351 HBG1P69891 147 aa13.38□□□□□ -0.27
CLN3-247ENST00000636351 HBG2P69892 147 aa13.38□□□□□ -0.27
CLN3-247ENST00000636351 TMEM252Q8N6L7 170 aa13.38□□□□□ -0.27
CLN3-247ENST00000636351 RNF125Q96EQ8 232 aa13.38□□□□□ -0.27
CLN3-247ENST00000636351 RNF2Q99496 336 aa13.38□□□□□ -0.27
CLN3-247ENST00000636351 EPPK1P58107 5090 aaKnown RBP13.37□□□□□ -0.27
CLN3-247ENST00000636351 IGKV3-7A0A075B6H7 116 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 TRAV25A0A0B4J276 109 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 A0A1W2PS18 150 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 FNDC10F2Z333 226 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 APOHP02749 345 aaPredicted RBP13.37□□□□□ -0.27
CLN3-247ENST00000636351 SULT1A1P50225 295 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 CD81P60033 236 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 USF2Q15853 346 aaPredicted RBP13.37□□□□□ -0.27
CLN3-247ENST00000636351 GRAMD2BQ96HH9 432 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 GGACTQ9BVM4 153 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 SLC25A31Q9H0C2 315 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 RABAC1Q9UI14 185 aa13.37□□□□□ -0.27
CLN3-247ENST00000636351 H0YIZ8 118 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 MPC2O95563 127 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 CRYBB3P26998 211 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 P2RY1P47900 373 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 RPL11P62913 178 aaKnown RBP13.36□□□□□ -0.27
CLN3-247ENST00000636351 ZFAND6Q6FIF0 208 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 TCF24Q7RTU0 167 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 BPIFCQ8NFQ6 507 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 OR11H7Q8NGC8 314 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 PPP1R14BQ96C90 147 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 CITED4Q96RK1 184 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 NPVFQ9HCQ7 196 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 UQCC1Q9NVA1 299 aa13.36□□□□□ -0.27
CLN3-247ENST00000636351 LCE6AA0A183 80 aa13.35□□□□□ -0.27
CLN3-247ENST00000636351 UBE2L5PA0A1B0GUS4 154 aa13.35□□□□□ -0.27
CLN3-247ENST00000636351 ZNF785A8K8V0 405 aa13.35□□□□□ -0.27
CLN3-247ENST00000636351 EWSR1Q01844 656 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLN3-247ENST00000636351 TEPPQ6URK8 271 aa13.35□□□□□ -0.27
CLN3-247ENST00000636351 CYP2G1PQ6ZSU1 146 aa13.35□□□□□ -0.27
CLN3-247ENST00000636351 SPAG8Q99932 426 aaPredicted RBP13.35□□□□□ -0.27
CLN3-247ENST00000636351 TMEM147Q9BVK8 224 aa13.35□□□□□ -0.27
CLN3-247ENST00000636351 VSIRQ9H7M9 311 aa13.35□□□□□ -0.27
CLN3-247ENST00000636351 MBD2Q9UBB5 411 aa13.35□□□□□ -0.27
CLN3-247ENST00000636351 PFDN2Q9UHV9 154 aa13.35□□□□□ -0.27
CLN3-247ENST00000636351 DNAH1Q9P2D7 4330 aa13.34□□□□□ -0.27
CLN3-247ENST00000636351 TSPAN4O14817 238 aa13.34□□□□□ -0.27
CLN3-247ENST00000636351 CFDP00746 253 aaPredicted RBP13.34□□□□□ -0.27
CLN3-247ENST00000636351 GATA2P23769 480 aaPredicted RBP13.34□□□□□ -0.27
CLN3-247ENST00000636351 S100A11P31949 105 aa13.34□□□□□ -0.27
CLN3-247ENST00000636351 NUP62P37198 522 aaPredicted RBP13.34□□□□□ -0.27
CLN3-247ENST00000636351 TFPI2P48307 235 aa13.34□□□□□ -0.27
CLN3-247ENST00000636351 EIF2B2P49770 351 aaKnown RBP13.34□□□□□ -0.27
CLN3-247ENST00000636351 NEURL2Q9BR09 285 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms