RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 DNAH17Q9UFH2 4485 aa11.6□□□□□ -0.55
CLN3-246ENST00000636228 TOMM40O96008 361 aa11.6□□□□□ -0.55
CLN3-246ENST00000636228 IFNA10P01566 189 aa11.6□□□□□ -0.55
CLN3-246ENST00000636228 PSG1P11464 419 aa11.6□□□□□ -0.55
CLN3-246ENST00000636228 GDF5OSQ5U4N7 250 aa11.6□□□□□ -0.55
CLN3-246ENST00000636228 OR4C16Q8NGL9 310 aa11.6□□□□□ -0.55
CLN3-246ENST00000636228 RSL24D1Q9UHA3 163 aaKnown RBP11.6□□□□□ -0.55
CLN3-246ENST00000636228 TMEM56-RWDD3S4R434 201 aa11.6□□□□□ -0.55
CLN3-246ENST00000636228 CCDC160A6NGH7 325 aa11.59□□□□□ -0.55
CLN3-246ENST00000636228 M0R2N4 97 aa11.59□□□□□ -0.55
CLN3-246ENST00000636228 EMP1P54849 157 aa11.59□□□□□ -0.55
CLN3-246ENST00000636228 NUTF2P61970 127 aaKnown RBP11.59□□□□□ -0.55
CLN3-246ENST00000636228 ETFRF1Q6IPR1 90 aa11.59□□□□□ -0.55
CLN3-246ENST00000636228 OR51S1Q8NGJ8 323 aa11.59□□□□□ -0.55
CLN3-246ENST00000636228 PBDC1Q9BVG4 233 aa11.59□□□□□ -0.55
CLN3-246ENST00000636228 IGHV3OR16-12A0A075B7B8 117 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 A6NHS1 94 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 AKAIN1P0CW23 69 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 SULT1A3P0DMM9 295 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 SULT1A4P0DMN0 295 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 SURF2Q15527 256 aaPredicted RBP11.58□□□□□ -0.56
CLN3-246ENST00000636228 NMSQ5H8A3 153 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 LYZL2Q7Z4W2 148 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 DYNC2LI1Q8TCX1 351 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 SMIM4Q8WVI0 70 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 LINC00052Q96N35 136 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 C1QTNF4Q9BXJ3 329 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 RBKSQ9H477 322 aa11.58□□□□□ -0.56
CLN3-246ENST00000636228 AMBPP02760 352 aa11.57□□□□□ -0.56
CLN3-246ENST00000636228 HLA-DRB4P13762 266 aa11.57□□□□□ -0.56
CLN3-246ENST00000636228 ZNF90Q03938 601 aa11.57□□□□□ -0.56
CLN3-246ENST00000636228 SSBP1Q04837 148 aaKnown RBP11.57□□□□□ -0.56
CLN3-246ENST00000636228 KLF9Q13886 244 aaPredicted RBP11.57□□□□□ -0.56
CLN3-246ENST00000636228 IL18Q14116 193 aa11.57□□□□□ -0.56
CLN3-246ENST00000636228 DTD1Q8TEA8 209 aa11.57□□□□□ -0.56
CLN3-246ENST00000636228 RNF125Q96EQ8 232 aa11.57□□□□□ -0.56
CLN3-246ENST00000636228 WDR12Q9GZL7 423 aaKnown RBP11.57□□□□□ -0.56
CLN3-246ENST00000636228 PLA2G2EQ9NZK7 142 aa11.57□□□□□ -0.56
CLN3-246ENST00000636228 HLA-DRB4X5D2U9 266 aa11.57□□□□□ -0.56
CLN3-246ENST00000636228 GSTZ1O43708 216 aaPredicted RBP11.56□□□□□ -0.56
CLN3-246ENST00000636228 AKR1C4P17516 323 aa11.56□□□□□ -0.56
CLN3-246ENST00000636228 NKX2-1P43699 371 aaPredicted RBP11.56□□□□□ -0.56
CLN3-246ENST00000636228 MRPS10P82664 201 aaKnown RBP11.56□□□□□ -0.56
CLN3-246ENST00000636228 LGI3Q8N145 548 aa11.56□□□□□ -0.56
CLN3-246ENST00000636228 POM121L12Q8N7R1 296 aa11.56□□□□□ -0.56
CLN3-246ENST00000636228 DIRAS2Q96HU8 199 aa11.56□□□□□ -0.56
CLN3-246ENST00000636228 NDUFAF3Q9BU61 184 aa11.56□□□□□ -0.56
CLN3-246ENST00000636228 SEPSECSQ9HD40 501 aaKnown RBP11.56□□□□□ -0.56
CLN3-246ENST00000636228 BATF3Q9NR55 127 aa11.56□□□□□ -0.56
CLN3-246ENST00000636228 CCDC59Q9P031 241 aaKnown RBP11.56□□□□□ -0.56
CLN3-246ENST00000636228 IGKV1D-37A0A075B6S9 117 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 A0A1B0GVY2 172 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 ZFP92A6NM28 416 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 OR2F1Q13607 317 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 GAMTQ14353 236 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 ZNF705AQ6ZN79 300 aaPredicted RBP11.55□□□□□ -0.56
CLN3-246ENST00000636228 LINC00336Q6ZUF6 198 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 NOXA1Q86UR1 476 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 IL22RA2Q969J5 263 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 PRRT1Q99946 306 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 HSPB7Q9UBY9 170 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 KCNIP3Q9Y2W7 256 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 U3KQ87 197 aa11.55□□□□□ -0.56
CLN3-246ENST00000636228 ZNF705FA8MVS1 300 aaPredicted RBP11.54□□□□□ -0.56
CLN3-246ENST00000636228 RTL8CO15255 209 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 ZNF705DP0CH99 300 aaPredicted RBP11.54□□□□□ -0.56
CLN3-246ENST00000636228 ZNF705BP0CI00 300 aaPredicted RBP11.54□□□□□ -0.56
CLN3-246ENST00000636228 SPART-AS1P0CW21 52 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 P0DMU3 169 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 FAM231AP0DMU4 169 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 FAM231CP0DMU5 169 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 CCR6P51684 374 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 LYZP61626 148 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 SUPT4H1P63272 117 aaKnown RBP11.54□□□□□ -0.56
CLN3-246ENST00000636228 SMCO1Q147U7 214 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 OR4B1Q8NGF8 309 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 SLIRPQ9GZT3 109 aaKnown RBP11.54□□□□□ -0.56
CLN3-246ENST00000636228 SLC35B3Q9H1N7 401 aa11.54□□□□□ -0.56
CLN3-246ENST00000636228 A0A0B4J2A0 478 aa11.53□□□□□ -0.56
CLN3-246ENST00000636228 ANKRD20A5PA0PJZ0 165 aa11.53□□□□□ -0.56
CLN3-246ENST00000636228 F6UB75 175 aa11.53□□□□□ -0.56
CLN3-246ENST00000636228 CTDSPLO15194 276 aa11.53□□□□□ -0.56
CLN3-246ENST00000636228 ZNF709Q8N972 641 aa11.53□□□□□ -0.56
CLN3-246ENST00000636228 NEU1Q99519 415 aa11.53□□□□□ -0.56
CLN3-246ENST00000636228 SAV1Q9H4B6 383 aaPredicted RBP11.53□□□□□ -0.56
CLN3-246ENST00000636228 MCUBQ9NWR8 336 aa11.53□□□□□ -0.56
CLN3-246ENST00000636228 SHPKQ9UHJ6 478 aa11.53□□□□□ -0.56
CLN3-246ENST00000636228 DYNC1H1Q14204 4646 aaKnown RBP11.53□□□□□ -0.56
CLN3-246ENST00000636228 IGLV2-18A0A075B6J9 118 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 PRSS29PA6NIE9 313 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 SOCS3O14543 225 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 IAPPP10997 89 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 HTN3P15516 51 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 ID1P41134 155 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 FAM222AQ5U5X8 452 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 OR1S1Q8NH92 325 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 COQ8AQ8NI60 647 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 SLC35E1Q96K37 410 aa11.52□□□□□ -0.57
CLN3-246ENST00000636228 PAIP2BQ9ULR5 123 aaKnown RBP11.52□□□□□ -0.57
CLN3-246ENST00000636228 GPX4P36969 197 aaPredicted RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms