RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 DUTP33316 252 aaKnown RBP7.41□□□□□ -1.22
VCL-206ENST00000623461 CCL8P80075 99 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 RNF115Q9Y4L5 304 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 MORN2Q502X0 79 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 RSPO3Q9BXY4 272 aaPredicted RBP7.41□□□□□ -1.22
VCL-206ENST00000623461 VWA8A3KMH1 1905 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 CD300EQ496F6 205 aaPredicted RBP7.41□□□□□ -1.22
VCL-206ENST00000623461 C8orf46Q8TAG6 207 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 PSMB11A5LHX3 300 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 IGKV1-5P01602 117 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 CRYGSP22914 178 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 GTSCR1Q86UQ5 136 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 CHAC1Q9BUX1 264 aa7.41□□□□□ -1.22
VCL-206ENST00000623461 TMEM131Q92545 1883 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 ZNHIT1O43257 154 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 PF4V1P10720 104 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 TMEM155Q4W5P6 130 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 COA6Q5JTJ3 125 aaKnown RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 C11orf68Q9H3H3 251 aaKnown RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 MLNRO43193 412 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 ATP5G2Q06055 141 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 RSPO4Q2I0M5 234 aaPredicted RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 SLC25A39Q9BZJ4 359 aaPredicted RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 M0R381 172 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 SPANXCQ9NY87 97 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 TSSC4Q9Y5U2 329 aaPredicted RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 KIF26AQ9ULI4 1882 aaPredicted RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 IGKV1-12A0A0C4DH73 117 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 RBMY1BA6NDE4 496 aaKnown RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 RBMY1EA6NEQ0 496 aaKnown RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 IGKV1D-12P01611 117 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 RBMY1DP0C7P1 496 aaKnown RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 RBMY1A1P0DJD3 496 aaKnown RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 RBMY1CP0DJD4 496 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 RNF182Q8N6D2 247 aa7.4□□□□□ -1.22
VCL-206ENST00000623461 SP7Q8TDD2 431 aaPredicted RBP7.4□□□□□ -1.22
VCL-206ENST00000623461 CACNA1IQ9P0X4 2223 aa7.4□□□□□ -1.23
VCL-206ENST00000623461 SAA1P0DJI8 122 aaPredicted RBP7.4□□□□□ -1.23
VCL-206ENST00000623461 PRTN3P24158 256 aa7.4□□□□□ -1.23
VCL-206ENST00000623461 SRSF6Q13247 344 aaKnown RBP7.4□□□□□ -1.23
VCL-206ENST00000623461 TANC1Q9C0D5 1861 aa7.4□□□□□ -1.23
VCL-206ENST00000623461 TMEM238C9JI98 176 aa7.4□□□□□ -1.23
VCL-206ENST00000623461 CCL21O00585 134 aa7.4□□□□□ -1.23
VCL-206ENST00000623461 FOXL2P58012 376 aa7.4□□□□□ -1.23
VCL-206ENST00000623461 SUMO2P61956 95 aaKnown RBP7.4□□□□□ -1.23
VCL-206ENST00000623461 C18orf32Q8TCD1 76 aa7.4□□□□□ -1.23
VCL-206ENST00000623461 SLC50A1Q9BRV3 221 aa7.4□□□□□ -1.23
VCL-206ENST00000623461 PLSCR4Q9NRQ2 329 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 D6R8Y8 96 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 SFTA2Q6UW10 78 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 ZNRF1Q8ND25 227 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 IGHV2OR16-5A0A0B4J2B6 119 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 STPG1Q5TH74 334 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 SPATA31B1PQ5VZV4 182 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 KLF12Q9Y4X4 402 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 FOXH1O75593 365 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 C1orf162Q8NEQ5 155 aaPredicted RBP7.39□□□□□ -1.23
VCL-206ENST00000623461 COX8AP10176 69 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 SAA2-SAA4A0A096LPE2 208 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 TRAV2A0A0B4J234 112 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 RNASE1P07998 156 aaKnown RBP7.39□□□□□ -1.23
VCL-206ENST00000623461 SAA2P0DJI9 122 aaPredicted RBP7.39□□□□□ -1.23
VCL-206ENST00000623461 RTN4RL2Q86UN3 420 aa7.39□□□□□ -1.23
VCL-206ENST00000623461 SEPSECSQ9HD40 501 aaKnown RBP7.39□□□□□ -1.23
VCL-206ENST00000623461 TRAV8-1A0A0A6YYK1 113 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 GAGE12HA6NDE8 117 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 FAM74A4Q5TZK3 123 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 PMS2CLQ68D20 193 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 VOPP1Q96AW1 172 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 LINC00312Q9Y6C7 94 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 TRBV20-1A0A075B6N2 111 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 C9orf172C9J069 976 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 STPG4Q8N801 248 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 TNFRSF18Q9Y5U5 241 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 SIVA1O15304 175 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 Q6ZT83 130 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 M0R2P5 195 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 DMRTC2Q8IXT2 367 aaPredicted RBP7.38□□□□□ -1.23
VCL-206ENST00000623461 MRPL20Q9BYC9 149 aaKnown RBP7.38□□□□□ -1.23
VCL-206ENST00000623461 DOCK8Q8NF50 2099 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 TNFRSF6BO95407 300 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 IFI27P40305 119 aaPredicted RBP7.38□□□□□ -1.23
VCL-206ENST00000623461 FAM106AQ4KMX7 169 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 PPDPFLQ8WWR9 84 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 DDB2Q92466 427 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 CSTL1Q9H114 145 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 TFF2Q03403 129 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 FLVCR1-AS1Q8TAF5 88 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 C21orf62Q9NYP8 219 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 A0A1W2PPM0 123 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 PF4P02776 101 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 CT83Q5H943 113 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 BVES-AS1Q5T3Y7 98 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 ZNF562Q6V9R5 426 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 LIME1Q9H400 295 aa7.38□□□□□ -1.23
VCL-206ENST00000623461 CEACAM4O75871 244 aa7.37□□□□□ -1.23
VCL-206ENST00000623461 CNTFRP26992 372 aa7.37□□□□□ -1.23
VCL-206ENST00000623461 ASCL4Q6XD76 172 aa7.37□□□□□ -1.23
VCL-206ENST00000623461 CITED1Q99966 193 aa7.37□□□□□ -1.23
VCL-206ENST00000623461 PGPEP1Q9NXJ5 209 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms