RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 NIT1Q86X76 327 aa11.75□□□□□ -0.53
SHROOM1-208ENST00000617339 SGK494Q96LW2 274 aa11.75□□□□□ -0.53
SHROOM1-208ENST00000617339 CTSZQ9UBR2 303 aa11.75□□□□□ -0.53
SHROOM1-208ENST00000617339 WASHC3Q9Y3C0 194 aa11.75□□□□□ -0.53
SHROOM1-208ENST00000617339 S4R3C0 116 aa11.75□□□□□ -0.53
SHROOM1-208ENST00000617339 E7EUB6 86 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 TOX4O94842 621 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 Q0VG73 95 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 CENPWQ5EE01 88 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 PLEKHA3Q9HB20 300 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 SEPSECSQ9HD40 501 aaKnown RBP11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 H3BTX0 84 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 HSBP1O75506 76 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 GPR6P46095 362 aaPredicted RBP11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 GNG4P50150 75 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 PRRX1P54821 245 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 OR2T6Q8NHC8 308 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 TSKUQ8WUA8 353 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 EAF1Q96JC9 268 aaPredicted RBP11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 ARL2-SNX15V9GYD0 113 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 FAM90A26D6RGX4 464 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 FCN3O75636 299 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 SAA1P0DJI8 122 aaPredicted RBP11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 PMCHL1Q16048 86 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 IGF2-ASQ6U949 168 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 TREML4Q6UXN2 200 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 KIR3DL3Q8N743 410 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 SLC24A4Q8NFF2 622 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 TPSG1Q9NRR2 321 aa11.74□□□□□ -0.53
SHROOM1-208ENST00000617339 CLEC5AQ9NY25 188 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 INSIG2Q9Y5U4 225 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 ACANP16112 2415 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 TMEM178BH3BS89 294 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 M0R2Z0 102 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 CXorf1O96002 111 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 ESDP10768 282 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 GCHFRP30047 84 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 CA7P43166 264 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 MPV17L2Q567V2 206 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 AP1S3Q96PC3 154 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 OR7C2O60412 319 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 CNTFRP26992 372 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 RAB31Q13636 194 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 TNXAQ16473 311 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 TRAT1Q6PIZ9 186 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 OR8B3Q8NGG8 313 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 OR9G1Q8NH87 305 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 OR8B2Q96RD0 313 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 MCRIP2Q9BUT9 160 aaKnown RBP11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 WDR83OSQ9Y284 106 aa11.73□□□□□ -0.53
SHROOM1-208ENST00000617339 OR2T8A6NH00 312 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 BMPR1BO00238 502 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 IGLL1P15814 213 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 USF1P22415 310 aaPredicted RBP11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 RIPPLY3P57055 190 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 RPUSD1Q9UJJ7 312 aaKnown RBP11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 V9GYV3 84 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 SH2D7A6NKC9 451 aaPredicted RBP11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 B9A039 149 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 HSPE1P61604 102 aaKnown RBP11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 TMEM136Q6ZRR5 245 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 MGST2Q99735 147 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 SSBP4Q9BWG4 385 aaPredicted RBP11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 PPIAL4CA0A0B4J2A2 164 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 HELTA6NFD8 242 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 F2RL2O00254 374 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 APCSP02743 223 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 PPIAL4GP0DN37 164 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 RPL19P84098 196 aaKnown RBP11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 EIF4EBP1Q13541 118 aaPredicted RBP11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 CLEC2AQ6UVW9 174 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 PNKDQ8N490 385 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 GSX1Q9H4S2 264 aaPredicted RBP11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 CDC42EP3Q9UKI2 254 aa11.72□□□□□ -0.53
SHROOM1-208ENST00000617339 CAMPP49913 170 aa11.71□□□□□ -0.53
SHROOM1-208ENST00000617339 FLYWCH2Q96CP2 140 aaKnown RBP11.71□□□□□ -0.53
SHROOM1-208ENST00000617339 IGHV2-70DA0A0C4DH43 119 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 SHISA9B4DS77 424 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 K7EP13 123 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 PSG5Q15238 335 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 Q8N7P7 452 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 NUDT3O95989 172 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 STAG3L2P0CL84 134 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 STAG3L3P0CL85 134 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 OPRK1P41145 380 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 AMMECR1LQ6DCA0 310 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 GNB1LQ9BYB4 327 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 CST9LQ9H4G1 147 aa11.71□□□□□ -0.54
SHROOM1-208ENST00000617339 FLNBO75369 2602 aaKnown RBP11.7□□□□□ -0.54
SHROOM1-208ENST00000617339 TOMM40O96008 361 aa11.7□□□□□ -0.54
SHROOM1-208ENST00000617339 PRR27Q6MZM9 219 aa11.7□□□□□ -0.54
SHROOM1-208ENST00000617339 ZNF841Q6ZN19 808 aa11.7□□□□□ -0.54
SHROOM1-208ENST00000617339 ZNF331Q9NQX6 463 aaPredicted RBP11.7□□□□□ -0.54
SHROOM1-208ENST00000617339 CUBNO60494 3623 aa11.7□□□□□ -0.54
SHROOM1-208ENST00000617339 A0A1W2PN81 502 aa11.7□□□□□ -0.54
SHROOM1-208ENST00000617339 SLAQ13239 276 aa11.7□□□□□ -0.54
SHROOM1-208ENST00000617339 GGTLC1Q9BX51 225 aa11.7□□□□□ -0.54
SHROOM1-208ENST00000617339 RPL8P62917 257 aaKnown RBP11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 TIGITQ495A1 244 aa11.69□□□□□ -0.54
SHROOM1-208ENST00000617339 ZNF672Q499Z4 452 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms