RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 ANKRD20A5PA0PJZ0 165 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 SUPT4H1P63272 117 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 ZNF90Q03938 601 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 KLF9Q13886 244 aaPredicted RBP11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 NOXA1Q86UR1 476 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 CENPSQ8N2Z9 138 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 IL22RA2Q969J5 263 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 PRRT1Q99946 306 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 RNF126Q9BV68 326 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 WDR12Q9GZL7 423 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 RBKSQ9H477 322 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 SEPSECSQ9HD40 501 aaKnown RBP11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 HSPB7Q9UBY9 170 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 KCNIP3Q9Y2W7 256 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 HERC2O95714 4834 aa11.3□□□□□ -0.6
SHKBP1-228ENST00000602239 HECTD4Q9Y4D8 3996 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 IGKV1D-37A0A075B6S9 117 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 IGKV3-20P01619 116 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 HLA-DRB4P13762 266 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 AKR1C4P17516 323 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 FXYD7P58549 80 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 NUTF2P61970 127 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 GAMTQ14353 236 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 GPR141Q7Z602 305 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 LGI3Q8N145 548 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 DTD1Q8TEA8 209 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 RNF125Q96EQ8 232 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 PBDC1Q9BVG4 233 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 C1QTNF4Q9BXJ3 329 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 U3KQ87 197 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 HLA-DRB4X5D2U9 266 aa11.29□□□□□ -0.6
SHKBP1-228ENST00000602239 GSTZ1O43708 216 aaPredicted RBP11.28□□□□□ -0.6
SHKBP1-228ENST00000602239 NKX2-1P43699 371 aaPredicted RBP11.28□□□□□ -0.6
SHKBP1-228ENST00000602239 CCR6P51684 374 aa11.28□□□□□ -0.6
SHKBP1-228ENST00000602239 SMCO1Q147U7 214 aa11.28□□□□□ -0.6
SHKBP1-228ENST00000602239 DYNC2LI1Q8TCX1 351 aa11.28□□□□□ -0.6
SHKBP1-228ENST00000602239 KIAA1109Q2LD37 5005 aa11.27□□□□□ -0.6
SHKBP1-228ENST00000602239 A0A0B4J2A0 478 aa11.27□□□□□ -0.61
SHKBP1-228ENST00000602239 ZNF705AQ6ZN79 300 aaPredicted RBP11.27□□□□□ -0.61
SHKBP1-228ENST00000602239 LINC00052Q96N35 136 aa11.27□□□□□ -0.61
SHKBP1-228ENST00000602239 MRPS26Q9BYN8 205 aaKnown RBP11.27□□□□□ -0.61
SHKBP1-228ENST00000602239 MCUBQ9NWR8 336 aa11.27□□□□□ -0.61
SHKBP1-228ENST00000602239 CACFD1Q9UGQ2 172 aa11.27□□□□□ -0.61
SHKBP1-228ENST00000602239 SHPKQ9UHJ6 478 aa11.27□□□□□ -0.61
SHKBP1-228ENST00000602239 IGHV3OR16-12A0A075B7B8 117 aa11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 ZFP92A6NM28 416 aa11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 ZNF705FA8MVS1 300 aaPredicted RBP11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 AMBPP02760 352 aa11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 ZNF705DP0CH99 300 aaPredicted RBP11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 ZNF705BP0CI00 300 aaPredicted RBP11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 EMP1P54849 157 aa11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 SOSTQ9BQB4 213 aa11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 PLA2G2EQ9NZK7 142 aa11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 SCP2D1Q9UJQ7 156 aa11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 DNAH6Q9C0G6 4158 aa11.26□□□□□ -0.61
SHKBP1-228ENST00000602239 SOCS3O14543 225 aa11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 GPX4P36969 197 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 OR2F1Q13607 317 aa11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 OR8G2PQ6IF36 304 aa11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 POM121L12Q8N7R1 296 aa11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 ZNF709Q8N972 641 aa11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 OR1S1Q8NH92 325 aa11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 NEU1Q99519 415 aa11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 SAV1Q9H4B6 383 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 CCDC59Q9P031 241 aaKnown RBP11.25□□□□□ -0.61
SHKBP1-228ENST00000602239 IGKV1OR2-108A0A075B7D4 117 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 F6UB75 175 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 M0R2N4 97 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 PITX3O75364 302 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 SPART-AS1P0CW21 52 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 TNFSF8P32971 234 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 LYZP61626 148 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 OR4B1Q8NGF8 309 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 SCGB3A2Q96PL1 93 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 NDUFAF3Q9BU61 184 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 SLC35B3Q9H1N7 401 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 RABL2AQ9UBK7 228 aaPredicted RBP11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 RABL2BQ9UNT1 228 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 DNAH2Q9P225 4427 aa11.24□□□□□ -0.61
SHKBP1-228ENST00000602239 FAT2Q9NYQ8 4349 aa11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 A0A1B0GVY2 172 aa11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 SNRPGP15A8MWD9 76 aa11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 IAPPP10997 89 aa11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 ATP5IP56385 69 aaPredicted RBP11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 FOXI2Q6ZQN5 318 aa11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 RAB2BQ8WUD1 216 aa11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 SLC35E1Q96K37 410 aa11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 SLIRPQ9GZT3 109 aaKnown RBP11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 RSL24D1Q9UHA3 163 aaKnown RBP11.23□□□□□ -0.61
SHKBP1-228ENST00000602239 FABP12A6NFH5 140 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 SMIM9A6NGZ8 99 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 RTL8CO15255 209 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 P0DMU3 169 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 FAM231AP0DMU4 169 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 FAM231CP0DMU5 169 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 ID1P41134 155 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 PSMB3P49720 205 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 ZNF79Q15937 498 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 C1orf194Q5T5A4 169 aa11.22□□□□□ -0.61
SHKBP1-228ENST00000602239 FAM78BQ5VT40 261 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms