RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 LOC102724200A0A096LPH7 203 aaPredicted RBP14.48□□□□□ -0.09
UPF1-212ENST00000601689 IGHV3-66A0A0C4DH42 116 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 TSC22D2O75157 780 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 DFFBO76075 338 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 P2RY1P47900 373 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 TFPI2P48307 235 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 RNF125Q96EQ8 232 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 RCHY1Q96PM5 261 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 TRGV9Q99603 122 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 PBDC1Q9BVG4 233 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 MGAT4CQ9UBM8 478 aa14.48□□□□□ -0.09
UPF1-212ENST00000601689 TRAV2A0A0B4J234 112 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 SMCO3A2RU48 225 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 INMT-MINDY4F8WBC2 141 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 CCSO14618 274 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 HAGHQ16775 308 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 FAM90A2PQ658T7 463 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 OR8G2PQ6IF36 304 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 WFDC3Q8IUB2 231 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 GBGT1Q8N5D6 347 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 PPP1R14BQ96C90 147 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 ZNF414Q96IQ9 312 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 UBQLN2Q9UHD9 624 aa14.47□□□□□ -0.09
UPF1-212ENST00000601689 LSM5Q9Y4Y9 91 aaKnown RBP14.47□□□□□ -0.09
UPF1-212ENST00000601689 APOHP02749 345 aaPredicted RBP14.46□□□□□ -0.09
UPF1-212ENST00000601689 BCAP31P51572 246 aa14.46□□□□□ -0.09
UPF1-212ENST00000601689 NRARPQ7Z6K4 114 aa14.46□□□□□ -0.09
UPF1-212ENST00000601689 TM2D3Q9BRN9 247 aa14.46□□□□□ -0.09
UPF1-212ENST00000601689 GGTLC1Q9BX51 225 aa14.46□□□□□ -0.09
UPF1-212ENST00000601689 WFDC10AQ9H1F0 79 aa14.46□□□□□ -0.09
UPF1-212ENST00000601689 MBPP02686 304 aaPredicted RBP14.45□□□□□ -0.1
UPF1-212ENST00000601689 APOC4P55056 127 aa14.45□□□□□ -0.1
UPF1-212ENST00000601689 TMEM144Q7Z5S9 345 aa14.45□□□□□ -0.1
UPF1-212ENST00000601689 S100A7AQ86SG5 101 aa14.45□□□□□ -0.1
UPF1-212ENST00000601689 THAP8Q8NA92 274 aa14.45□□□□□ -0.1
UPF1-212ENST00000601689 BPIFCQ8NFQ6 507 aa14.45□□□□□ -0.1
UPF1-212ENST00000601689 STXBP6Q8NFX7 210 aa14.45□□□□□ -0.1
UPF1-212ENST00000601689 MS4A6AQ9H2W1 248 aa14.45□□□□□ -0.1
UPF1-212ENST00000601689 RCL1Q9Y2P8 373 aaKnown RBP14.45□□□□□ -0.1
UPF1-212ENST00000601689 DNAH9Q9NYC9 4486 aa14.44□□□□□ -0.1
UPF1-212ENST00000601689 METTL15P1P0C7V9 234 aa14.44□□□□□ -0.1
UPF1-212ENST00000601689 LYZP61626 148 aa14.44□□□□□ -0.1
UPF1-212ENST00000601689 IFITM3Q01628 133 aa14.44□□□□□ -0.1
UPF1-212ENST00000601689 ZNF90Q03938 601 aa14.44□□□□□ -0.1
UPF1-212ENST00000601689 USF2Q15853 346 aaPredicted RBP14.44□□□□□ -0.1
UPF1-212ENST00000601689 ACOT7LQ6ZUV0 252 aa14.44□□□□□ -0.1
UPF1-212ENST00000601689 NPVFQ9HCQ7 196 aa14.44□□□□□ -0.1
UPF1-212ENST00000601689 FBXL17Q9UF56 701 aa14.44□□□□□ -0.1
UPF1-212ENST00000601689 RBMY1BA6NDE4 496 aaKnown RBP14.43□□□□□ -0.1
UPF1-212ENST00000601689 RBMY1EA6NEQ0 496 aaKnown RBP14.43□□□□□ -0.1
UPF1-212ENST00000601689 FNDC10F2Z333 226 aa14.43□□□□□ -0.1
UPF1-212ENST00000601689 RLN2P04090 185 aa14.43□□□□□ -0.1
UPF1-212ENST00000601689 RBMY1DP0C7P1 496 aaKnown RBP14.43□□□□□ -0.1
UPF1-212ENST00000601689 S100A10P60903 97 aa14.43□□□□□ -0.1
UPF1-212ENST00000601689 DLK1P80370 383 aa14.43□□□□□ -0.1
UPF1-212ENST00000601689 CYCSP99999 105 aaKnown RBP14.43□□□□□ -0.1
UPF1-212ENST00000601689 OR2F1Q13607 317 aa14.43□□□□□ -0.1
UPF1-212ENST00000601689 C16orf54Q6UWD8 224 aa14.43□□□□□ -0.1
UPF1-212ENST00000601689 TMEM14EPQ6UXP3 125 aa14.43□□□□□ -0.1
UPF1-212ENST00000601689 LINC00322Q6ZN03 302 aaPredicted RBP14.43□□□□□ -0.1
UPF1-212ENST00000601689 MARVELD1Q9BSK0 173 aa14.43□□□□□ -0.1
UPF1-212ENST00000601689 U3KQE9 123 aa14.43□□□□□ -0.1
UPF1-212ENST00000601689 IGKV1D-37A0A075B6S9 117 aa14.42□□□□□ -0.1
UPF1-212ENST00000601689 C7orf66A4D0T2 115 aa14.42□□□□□ -0.1
UPF1-212ENST00000601689 PRSS46E5RG02 174 aa14.42□□□□□ -0.1
UPF1-212ENST00000601689 K7EPK0 472 aa14.42□□□□□ -0.1
UPF1-212ENST00000601689 CAV2P51636 162 aa14.42□□□□□ -0.1
UPF1-212ENST00000601689 GGACTQ9BVM4 153 aa14.42□□□□□ -0.1
UPF1-212ENST00000601689 UBE2CO00762 179 aa14.41□□□□□ -0.1
UPF1-212ENST00000601689 BUB3O43684 328 aa14.41□□□□□ -0.1
UPF1-212ENST00000601689 PAX9P55771 341 aa14.41□□□□□ -0.1
UPF1-212ENST00000601689 RRAS2P62070 204 aaPredicted RBP14.41□□□□□ -0.1
UPF1-212ENST00000601689 SELENOTP62341 195 aa14.41□□□□□ -0.1
UPF1-212ENST00000601689 ODF3L2Q3SX64 289 aa14.41□□□□□ -0.1
UPF1-212ENST00000601689 SIGLEC15Q6ZMC9 328 aa14.41□□□□□ -0.1
UPF1-212ENST00000601689 LILRB2Q8N423 598 aa14.41□□□□□ -0.1
UPF1-212ENST00000601689 RNF24Q9Y225 148 aa14.41□□□□□ -0.1
UPF1-212ENST00000601689 COL7A1Q02388 2944 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 GOSR2O14653 212 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 SSNA1O43805 119 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 SNRPD3P62318 126 aaKnown RBP14.4□□□□□ -0.1
UPF1-212ENST00000601689 RAB31Q13636 194 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 C1orf194Q5T5A4 169 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 TEPPQ6URK8 271 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 STX12Q86Y82 276 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 STPG3Q8N7X2 389 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 GLMPQ8WWB7 406 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 TMEM147Q9BVK8 224 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 MAP6D1Q9H9H5 199 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 SLC45A2Q9UMX9 530 aa14.4□□□□□ -0.1
UPF1-212ENST00000601689 KIR2DL5BA0A0G2JN68 375 aa14.39□□□□□ -0.11
UPF1-212ENST00000601689 KIR2DL5BA0A0G2JPC4 375 aa14.39□□□□□ -0.11
UPF1-212ENST00000601689 RAP2BP61225 183 aa14.39□□□□□ -0.11
UPF1-212ENST00000601689 HBG1P69891 147 aa14.39□□□□□ -0.11
UPF1-212ENST00000601689 HBG2P69892 147 aa14.39□□□□□ -0.11
UPF1-212ENST00000601689 CYP2G1PQ6ZSU1 146 aa14.39□□□□□ -0.11
UPF1-212ENST00000601689 OR8I2Q8N0Y5 310 aa14.39□□□□□ -0.11
UPF1-212ENST00000601689 KIR2DL5AQ8N109 375 aa14.39□□□□□ -0.11
UPF1-212ENST00000601689 KIR2DL5BQ8NHK3 375 aa14.39□□□□□ -0.11
UPF1-212ENST00000601689 IGKV1OR2-108A0A075B7D4 117 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 178.9 ms