RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 GGTLC1Q9BX51 225 aa11□□□□□ -0.65
UPF1-211ENST00000600868 NPCDR1Q9BY65 106 aa11□□□□□ -0.65
UPF1-211ENST00000600868 SLC45A2Q9UMX9 530 aa11□□□□□ -0.65
UPF1-211ENST00000600868 IGHV3-35A0A0C4DH35 117 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 BOLA2-SMG1P6H3BVE0 249 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 M0QZ24 198 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 LGALS9O00182 355 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 C4BPBP20851 252 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 RPL29P47914 159 aaKnown RBP10.99□□□□□ -0.65
UPF1-211ENST00000600868 SLURP1P55000 103 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 TOMM20LQ6UXN7 152 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 TMEM182Q6ZP80 229 aaPredicted RBP10.99□□□□□ -0.65
UPF1-211ENST00000600868 REC114Q7Z4M0 266 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 C1QL4Q86Z23 238 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 BPIFCQ8NFQ6 507 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 OR51G1Q8NGK1 321 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 ZFAND3Q9H8U3 227 aa10.99□□□□□ -0.65
UPF1-211ENST00000600868 PUS1Q9Y606 427 aaKnown RBP eCLIP10.99□□□□□ -0.65
UPF1-211ENST00000600868 C17orf112F2Z3M2 114 aa10.98□□□□□ -0.65
UPF1-211ENST00000600868 HNRNPCP07910 306 aaKnown RBP eCLIP10.98□□□□□ -0.65
UPF1-211ENST00000600868 ZNF709Q8N972 641 aa10.98□□□□□ -0.65
UPF1-211ENST00000600868 TMEM190Q8WZ59 177 aa10.98□□□□□ -0.65
UPF1-211ENST00000600868 RCC1LQ96I51 464 aaKnown RBP10.98□□□□□ -0.65
UPF1-211ENST00000600868 ARV1Q9H2C2 271 aa10.98□□□□□ -0.65
UPF1-211ENST00000600868 KCNIP2Q9NS61 270 aa10.98□□□□□ -0.65
UPF1-211ENST00000600868 TIMM9Q9Y5J7 89 aa10.98□□□□□ -0.65
UPF1-211ENST00000600868 WI2-2373I1.2A0A1W2PRP0 233 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 YIF1AO95070 293 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 PF4P02776 101 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 IL4P05112 153 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 LINC00869P0C866 280 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 GATA2P23769 480 aaPredicted RBP10.97□□□□□ -0.65
UPF1-211ENST00000600868 ELLP55199 621 aaPredicted RBP10.97□□□□□ -0.65
UPF1-211ENST00000600868 SYNJ2BPP57105 145 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 PLP1P60201 277 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 EIF5AP63241 154 aaKnown RBP10.97□□□□□ -0.65
UPF1-211ENST00000600868 PRR20EP86478 221 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 PRR20CP86479 221 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 PRR20DP86480 221 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 PRR20BP86481 221 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 PRR20AP86496 221 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 PXDC1Q5TGL8 231 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 MIC13Q5XKP0 118 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 UNQ9165/PRO28630Q6UXU0 137 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 STPG3Q8N7X2 389 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 DLX4Q92988 240 aaPredicted RBP10.97□□□□□ -0.65
UPF1-211ENST00000600868 GINS3Q9BRX5 216 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 PSMG3Q9BT73 122 aaPredicted RBP10.97□□□□□ -0.65
UPF1-211ENST00000600868 RSG1Q9BU20 258 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 ZNF471Q9BX82 626 aaPredicted RBP10.97□□□□□ -0.65
UPF1-211ENST00000600868 PXMP4Q9Y6I8 212 aa10.97□□□□□ -0.65
UPF1-211ENST00000600868 ZNF320A2RRD8 509 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 A8MWP6 167 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 K7EMT4 169 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 ATP6V0CP27449 155 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 B2MP61769 119 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 LINC00482Q8N8I6 264 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 HSD17B11Q8NBQ5 300 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 SPATA3Q8NHX4 192 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 STOML3Q8TAV4 291 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 GNPNAT1Q96EK6 184 aaPredicted RBP10.96□□□□□ -0.65
UPF1-211ENST00000600868 RNF125Q96EQ8 232 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 SLC39A9Q9NUM3 307 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 UFC1Q9Y3C8 167 aa10.96□□□□□ -0.65
UPF1-211ENST00000600868 TSPAN15O95858 294 aa10.95□□□□□ -0.66
UPF1-211ENST00000600868 TPT1P13693 172 aaKnown RBP10.95□□□□□ -0.66
UPF1-211ENST00000600868 LYZP61626 148 aa10.95□□□□□ -0.66
UPF1-211ENST00000600868 Q6ZRG5 221 aa10.95□□□□□ -0.66
UPF1-211ENST00000600868 SLC51BQ86UW2 128 aa10.95□□□□□ -0.66
UPF1-211ENST00000600868 OR9G4Q8NGQ1 327 aa10.95□□□□□ -0.66
UPF1-211ENST00000600868 C20orf24Q9BUV8 137 aa10.95□□□□□ -0.66
UPF1-211ENST00000600868 DAZ1Q9NQZ3 744 aaKnown RBP10.95□□□□□ -0.66
UPF1-211ENST00000600868 PEMTQ9UBM1 199 aa10.95□□□□□ -0.66
UPF1-211ENST00000600868 IGHV3OR16-8A0A075B7F1 116 aa10.94□□□□□ -0.66
UPF1-211ENST00000600868 TMEM213A2RRL7 107 aa10.94□□□□□ -0.66
UPF1-211ENST00000600868 OVOL1O14753 267 aa10.94□□□□□ -0.66
UPF1-211ENST00000600868 HYPMO75409 117 aa10.94□□□□□ -0.66
UPF1-211ENST00000600868 SERF2P84101 59 aa10.94□□□□□ -0.66
UPF1-211ENST00000600868 USF2Q15853 346 aaPredicted RBP10.94□□□□□ -0.66
UPF1-211ENST00000600868 BAP18Q8IXM2 172 aa10.94□□□□□ -0.66
UPF1-211ENST00000600868 OR2G3Q8NGZ4 309 aa10.94□□□□□ -0.66
UPF1-211ENST00000600868 METTL26Q96S19 204 aa10.94□□□□□ -0.66
UPF1-211ENST00000600868 MRPL27Q9P0M9 148 aaKnown RBP10.94□□□□□ -0.66
UPF1-211ENST00000600868 BOLA1Q9Y3E2 137 aa10.94□□□□□ -0.66
UPF1-211ENST00000600868 ELOA3CA0A087WX78 387 aaPredicted RBP10.93□□□□□ -0.66
UPF1-211ENST00000600868 SPP1P10451 314 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 ORM2P19652 201 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 NPPCP23582 126 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 CRYBB3P26998 211 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 TM4SF20Q53R12 229 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 FFAR4Q5NUL3 377 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 OR1L4Q8NGR5 311 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 OR1B1Q8NGR6 318 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 MARC2Q969Z3 335 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 PBDC1Q9BVG4 233 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 SH3BGRL3Q9H299 93 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 DNAJC4Q9NNZ3 241 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 RABAC1Q9UI14 185 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 RFNGQ9Y644 331 aa10.93□□□□□ -0.66
UPF1-211ENST00000600868 U3KQE9 123 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms