RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ZNF705EA8MWA4 302 aaPredicted RBP7.12□□□□□ -1.27
VRK3-216ENST00000599342 IGLL5B9A064 214 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 FAM90A26D6RGX4 464 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 BUB3O43684 328 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 FABP1P07148 127 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 GIG44P09565 113 aaPredicted RBP7.12□□□□□ -1.27
VRK3-216ENST00000599342 PSG1P11464 419 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 AP3S2P59780 193 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 KLF9Q13886 244 aaPredicted RBP7.12□□□□□ -1.27
VRK3-216ENST00000599342 LYZL2Q7Z4W2 148 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 MCFD2Q8NI22 146 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 RNF125Q96EQ8 232 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 SLC35E1Q96K37 410 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 PBDC1Q9BVG4 233 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 C1QTNF4Q9BXJ3 329 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 SLIRPQ9GZT3 109 aaKnown RBP7.12□□□□□ -1.27
VRK3-216ENST00000599342 RBKSQ9H477 322 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 CLEC5AQ9NY25 188 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 TBC1D24Q9ULP9 559 aa7.12□□□□□ -1.27
VRK3-216ENST00000599342 DUXBA0A1W2PPF3 345 aa7.11□□□□□ -1.27
VRK3-216ENST00000599342 H3BMQ9 156 aa7.11□□□□□ -1.27
VRK3-216ENST00000599342 RBMY1A1P0DJD3 496 aaKnown RBP7.11□□□□□ -1.27
VRK3-216ENST00000599342 RBMY1CP0DJD4 496 aa7.11□□□□□ -1.27
VRK3-216ENST00000599342 TNFSF8P32971 234 aa7.11□□□□□ -1.27
VRK3-216ENST00000599342 ATP5IP56385 69 aaPredicted RBP7.11□□□□□ -1.27
VRK3-216ENST00000599342 RAB11AP62491 216 aa7.11□□□□□ -1.27
VRK3-216ENST00000599342 SUPT4H1P63272 117 aaKnown RBP7.11□□□□□ -1.27
VRK3-216ENST00000599342 RBMY1FQ15415 496 aaKnown RBP7.11□□□□□ -1.27
VRK3-216ENST00000599342 OR8G2PQ6IF36 304 aa7.11□□□□□ -1.27
VRK3-216ENST00000599342 TMED4Q7Z7H5 227 aa7.11□□□□□ -1.27
VRK3-216ENST00000599342 TOMM5Q8N4H5 51 aa7.11□□□□□ -1.27
VRK3-216ENST00000599342 SEPSECSQ9HD40 501 aaKnown RBP7.11□□□□□ -1.27
VRK3-216ENST00000599342 X6R8D5 127 aa7.11□□□□□ -1.27
VRK3-216ENST00000599342 TRAV10A0A0B4J240 114 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 VAMP1P23763 118 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 HLA-DMBP28068 263 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 GPX4P36969 197 aaPredicted RBP7.1□□□□□ -1.27
VRK3-216ENST00000599342 NKX2-1P43699 371 aaPredicted RBP7.1□□□□□ -1.27
VRK3-216ENST00000599342 LYZP61626 148 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 PYDC2Q56P42 97 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 TMEM128Q5BJH2 165 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 Q6ZTC4 211 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 PPP1R14BQ96C90 147 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 SOSTQ9BQB4 213 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 XCL2Q9UBD3 114 aa7.1□□□□□ -1.27
VRK3-216ENST00000599342 PAIP2BQ9ULR5 123 aaKnown RBP7.1□□□□□ -1.27
VRK3-216ENST00000599342 SNRPGP15A8MWD9 76 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 H3BMM0 161 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 MED6O75586 246 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 IAPPP10997 89 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 HLA-DRB4P13762 266 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 S100A5P33763 92 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 ID1P41134 155 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 RPP30P78346 268 aaKnown RBP7.09□□□□□ -1.27
VRK3-216ENST00000599342 ZNF90Q03938 601 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 GAMTQ14353 236 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 CSNK1G2-AS1Q8NCQ2 148 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 COQ8AQ8NI60 647 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 LINC00052Q96N35 136 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 CIB3Q96Q77 187 aaPredicted RBP7.09□□□□□ -1.27
VRK3-216ENST00000599342 HLA-DRB4X5D2U9 266 aa7.09□□□□□ -1.27
VRK3-216ENST00000599342 IGHV4-4A0A075B6R2 117 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 IGKV1D-37A0A075B6S9 117 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 ELOA3CA0A087WX78 387 aaPredicted RBP7.08□□□□□ -1.28
VRK3-216ENST00000599342 CCDC160A6NGH7 325 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 SLC25A6P12236 298 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 PSMB3P49720 205 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 OR2F1Q13607 317 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 C1orf194Q5T5A4 169 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 DEDD2Q8WXF8 326 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 TRIM63Q969Q1 353 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 TRGV9Q99603 122 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 SLC25A21Q9BQT8 299 aaPredicted RBP7.08□□□□□ -1.28
VRK3-216ENST00000599342 APLNQ9ULZ1 77 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 CELA1Q9UNI1 258 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 TMED3Q9Y3Q3 217 aa7.08□□□□□ -1.28
VRK3-216ENST00000599342 IGHV3OR16-12A0A075B7B8 117 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 PITX3O75364 302 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 IGKV3-20P01619 116 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 PRR20EP86478 221 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 PRR20CP86479 221 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 PRR20DP86480 221 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 PRR20BP86481 221 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 PRR20AP86496 221 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 SAMD13Q5VXD3 122 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 FOXI2Q6ZQN5 318 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 OR8I2Q8N0Y5 310 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 LRTM2Q8N967 370 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 RNF126Q9BV68 326 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 WDR12Q9GZL7 423 aaKnown RBP7.07□□□□□ -1.28
VRK3-216ENST00000599342 SAV1Q9H4B6 383 aaPredicted RBP7.07□□□□□ -1.28
VRK3-216ENST00000599342 V9GYH0 126 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 KMT2AQ03164 3969 aa7.07□□□□□ -1.28
VRK3-216ENST00000599342 AGRNO00468 2067 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 DEFB131BA0A096LNP1 70 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 TMEM189A5PLL7 270 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 WRBO00258 174 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 SYNGR2O43760 224 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 SFT2D2O95562 160 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 CFDP00746 253 aaPredicted RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms