RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 SLC25A31Q9H0C2 315 aa13.74□□□□□ -0.21
LIG1-216ENST00000598938 TECRQ9NZ01 308 aaKnown RBP13.74□□□□□ -0.21
LIG1-216ENST00000598938 MBD2Q9UBB5 411 aa13.74□□□□□ -0.21
LIG1-216ENST00000598938 MLXQ9UH92 298 aa13.74□□□□□ -0.21
LIG1-216ENST00000598938 IGHV7-4-1A0A0J9YVY3 117 aa13.73□□□□□ -0.21
LIG1-216ENST00000598938 FABP1P07148 127 aa13.73□□□□□ -0.21
LIG1-216ENST00000598938 S100A11P31949 105 aa13.73□□□□□ -0.21
LIG1-216ENST00000598938 EWSR1Q01844 656 aaKnown RBP eCLIP13.73□□□□□ -0.21
LIG1-216ENST00000598938 TMEM217Q8N7C4 229 aa13.73□□□□□ -0.21
LIG1-216ENST00000598938 SMPXQ9UHP9 88 aa13.73□□□□□ -0.21
LIG1-216ENST00000598938 WI2-2373I1.2A0A1W2PRP0 233 aa13.72□□□□□ -0.21
LIG1-216ENST00000598938 IL4P05112 153 aa13.72□□□□□ -0.21
LIG1-216ENST00000598938 HBG1P69891 147 aa13.72□□□□□ -0.21
LIG1-216ENST00000598938 HBG2P69892 147 aa13.72□□□□□ -0.21
LIG1-216ENST00000598938 NHLH2Q02577 135 aa13.72□□□□□ -0.21
LIG1-216ENST00000598938 VWC2Q2TAL6 325 aa13.72□□□□□ -0.21
LIG1-216ENST00000598938 BTNL8Q6UX41 500 aa13.72□□□□□ -0.21
LIG1-216ENST00000598938 Q6ZNX1 250 aa13.72□□□□□ -0.21
LIG1-216ENST00000598938 OR51G1Q8NGK1 321 aa13.72□□□□□ -0.21
LIG1-216ENST00000598938 IZUMO1RA6ND01 250 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 CHEK1O14757 476 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 CRYBB3P26998 211 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 BAXQ07812 192 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 FGL1Q08830 312 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 USF2Q15853 346 aaPredicted RBP13.71□□□□□ -0.21
LIG1-216ENST00000598938 ATP6V1FQ16864 119 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 CD300EQ496F6 205 aaPredicted RBP13.71□□□□□ -0.21
LIG1-216ENST00000598938 LCN12Q6JVE5 192 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 TEPPQ6URK8 271 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 LILRB2Q8N423 598 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 THAP6Q8TBB0 222 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 CHAC2Q8WUX2 184 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 TMEM147Q9BVK8 224 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 UQCC1Q9NVA1 299 aa13.71□□□□□ -0.21
LIG1-216ENST00000598938 ZNF256Q9Y2P7 627 aaPredicted RBP13.71□□□□□ -0.21
LIG1-216ENST00000598938 LSM4Q9Y4Z0 139 aaKnown RBP13.71□□□□□ -0.21
LIG1-216ENST00000598938 APOHP02749 345 aaPredicted RBP13.7□□□□□ -0.22
LIG1-216ENST00000598938 NPPCP23582 126 aa13.7□□□□□ -0.22
LIG1-216ENST00000598938 RPL12P30050 165 aaKnown RBP13.7□□□□□ -0.22
LIG1-216ENST00000598938 OR2F1Q13607 317 aa13.7□□□□□ -0.22
LIG1-216ENST00000598938 Q5BKY6 102 aa13.7□□□□□ -0.22
LIG1-216ENST00000598938 CYP2G1PQ6ZSU1 146 aa13.7□□□□□ -0.22
LIG1-216ENST00000598938 RNF125Q96EQ8 232 aa13.7□□□□□ -0.22
LIG1-216ENST00000598938 METTL26Q96S19 204 aa13.7□□□□□ -0.22
LIG1-216ENST00000598938 RHPN1-AS1Q9BWJ2 59 aa13.7□□□□□ -0.22
LIG1-216ENST00000598938 VSIRQ9H7M9 311 aa13.7□□□□□ -0.22
LIG1-216ENST00000598938 IGHV3-49A0A0A0MS15 119 aa13.69□□□□□ -0.22
LIG1-216ENST00000598938 CFDP00746 253 aaPredicted RBP13.69□□□□□ -0.22
LIG1-216ENST00000598938 TMEM182Q6ZP80 229 aaPredicted RBP13.69□□□□□ -0.22
LIG1-216ENST00000598938 OR5C1Q8NGR4 320 aa13.69□□□□□ -0.22
LIG1-216ENST00000598938 WDR83OSQ9Y284 106 aa13.69□□□□□ -0.22
LIG1-216ENST00000598938 HSPB11Q9Y547 144 aa13.69□□□□□ -0.22
LIG1-216ENST00000598938 SELENOKQ9Y6D0 94 aa13.69□□□□□ -0.22
LIG1-216ENST00000598938 U3KQE9 123 aa13.69□□□□□ -0.22
LIG1-216ENST00000598938 IGHV3OR16-13A0A075B7E8 117 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 IGHV3-74A0A0B4J1X5 117 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 TRAV25A0A0B4J276 109 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 HNRNPCP07910 306 aaKnown RBP eCLIP13.68□□□□□ -0.22
LIG1-216ENST00000598938 GP9P14770 177 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 GATA2P23769 480 aaPredicted RBP13.68□□□□□ -0.22
LIG1-216ENST00000598938 BMI1P35226 326 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 SELENOTP62341 195 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 TMEM61Q8N0U2 210 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 BPIFCQ8NFQ6 507 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 OR2T35Q8NGX2 323 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 ST8SIA2Q92186 375 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 PRR25Q96S07 402 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 MGST2Q99735 147 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 B9D2Q9BPU9 175 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 RABAC1Q9UI14 185 aa13.68□□□□□ -0.22
LIG1-216ENST00000598938 ZNF785A8K8V0 405 aa13.67□□□□□ -0.22
LIG1-216ENST00000598938 G3V3Q6 166 aa13.67□□□□□ -0.22
LIG1-216ENST00000598938 LYZP61626 148 aa13.67□□□□□ -0.22
LIG1-216ENST00000598938 DEFB121Q5J5C9 76 aa13.67□□□□□ -0.22
LIG1-216ENST00000598938 RNF2Q99496 336 aa13.67□□□□□ -0.22
LIG1-216ENST00000598938 PBDC1Q9BVG4 233 aa13.67□□□□□ -0.22
LIG1-216ENST00000598938 TMEM231Q9H6L2 316 aa13.67□□□□□ -0.22
LIG1-216ENST00000598938 UBE2L5PA0A1B0GUS4 154 aa13.66□□□□□ -0.22
LIG1-216ENST00000598938 A0A1W2PS18 150 aa13.66□□□□□ -0.22
LIG1-216ENST00000598938 AGPAT2O15120 278 aa13.66□□□□□ -0.22
LIG1-216ENST00000598938 EIF2B2P49770 351 aaKnown RBP13.66□□□□□ -0.22
LIG1-216ENST00000598938 FAM90A2PQ658T7 463 aa13.66□□□□□ -0.22
LIG1-216ENST00000598938 ZNF546Q86UE3 836 aa13.66□□□□□ -0.22
LIG1-216ENST00000598938 NARS2Q96I59 477 aaKnown RBP13.66□□□□□ -0.22
LIG1-216ENST00000598938 SLC45A2Q9UMX9 530 aa13.66□□□□□ -0.22
LIG1-216ENST00000598938 IGHV3-66A0A0C4DH42 116 aa13.65□□□□□ -0.22
LIG1-216ENST00000598938 TSPAN4O14817 238 aa13.65□□□□□ -0.22
LIG1-216ENST00000598938 PLP1P60201 277 aa13.65□□□□□ -0.22
LIG1-216ENST00000598938 CLINT1Q14677 625 aa13.65□□□□□ -0.22
LIG1-216ENST00000598938 LAMTOR1Q6IAA8 161 aa13.65□□□□□ -0.22
LIG1-216ENST00000598938 RBPMS2Q6ZRY4 209 aaKnown RBP13.65□□□□□ -0.22
LIG1-216ENST00000598938 AQP10Q96PS8 301 aa13.65□□□□□ -0.22
LIG1-216ENST00000598938 CD5P06127 495 aa13.64□□□□□ -0.23
LIG1-216ENST00000598938 LINC00869P0C866 280 aa13.64□□□□□ -0.23
LIG1-216ENST00000598938 FGF7P21781 194 aa13.64□□□□□ -0.23
LIG1-216ENST00000598938 NUP62P37198 522 aaPredicted RBP13.64□□□□□ -0.23
LIG1-216ENST00000598938 CAMLGP49069 296 aa13.64□□□□□ -0.23
LIG1-216ENST00000598938 RAB31Q13636 194 aa13.64□□□□□ -0.23
LIG1-216ENST00000598938 C16orf54Q6UWD8 224 aa13.64□□□□□ -0.23
LIG1-216ENST00000598938 STPG3Q8N7X2 389 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms