RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 PRR20CP86479 221 aa10.39□□□□□ -0.75
VMP1-206ENST00000587945 PRR20DP86480 221 aa10.39□□□□□ -0.75
VMP1-206ENST00000587945 PRR20BP86481 221 aa10.39□□□□□ -0.75
VMP1-206ENST00000587945 PRR20AP86496 221 aa10.39□□□□□ -0.75
VMP1-206ENST00000587945 CSNK1G2-AS1Q8NCQ2 148 aa10.39□□□□□ -0.75
VMP1-206ENST00000587945 BCL7BQ9BQE9 202 aa10.39□□□□□ -0.75
VMP1-206ENST00000587945 SHPKQ9UHJ6 478 aa10.39□□□□□ -0.75
VMP1-206ENST00000587945 U3KQ87 197 aa10.39□□□□□ -0.75
VMP1-206ENST00000587945 ELOA3CA0A087WX78 387 aaPredicted RBP10.38□□□□□ -0.75
VMP1-206ENST00000587945 HLA-DMBP28068 263 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 ZNF90Q03938 601 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 KLF9Q13886 244 aaPredicted RBP10.38□□□□□ -0.75
VMP1-206ENST00000587945 TMEM41BQ5BJD5 291 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 GSG1LQ6UXU4 331 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 SIGLEC15Q6ZMC9 328 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 OR1S1Q8NH92 325 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 MCFD2Q8NI22 146 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 PBDC1Q9BVG4 233 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 NRN1Q9NPD7 142 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 CACFD1Q9UGQ2 172 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 TBC1D24Q9ULP9 559 aa10.38□□□□□ -0.75
VMP1-206ENST00000587945 NOL3O60936 208 aaKnown RBP10.37□□□□□ -0.75
VMP1-206ENST00000587945 ANXA3P12429 323 aa10.37□□□□□ -0.75
VMP1-206ENST00000587945 MIFP14174 115 aa10.37□□□□□ -0.75
VMP1-206ENST00000587945 DEFB1P60022 68 aa10.37□□□□□ -0.75
VMP1-206ENST00000587945 SNRPD3P62318 126 aaKnown RBP10.37□□□□□ -0.75
VMP1-206ENST00000587945 GAMTQ14353 236 aa10.37□□□□□ -0.75
VMP1-206ENST00000587945 Q6ZTC4 211 aa10.37□□□□□ -0.75
VMP1-206ENST00000587945 TMED4Q7Z7H5 227 aa10.37□□□□□ -0.75
VMP1-206ENST00000587945 RNF125Q96EQ8 232 aa10.37□□□□□ -0.75
VMP1-206ENST00000587945 HRH4Q9H3N8 390 aa10.37□□□□□ -0.75
VMP1-206ENST00000587945 XCL2Q9UBD3 114 aa10.37□□□□□ -0.75
VMP1-206ENST00000587945 IGKV1D-37A0A075B6S9 117 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 ZFP92A6NM28 416 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 H3BMM0 161 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 IAPPP10997 89 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 PYDC2Q56P42 97 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 TRIM63Q969Q1 353 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 APLNQ9ULZ1 77 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 CELA1Q9UNI1 258 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 AGRNO00468 2067 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 DNAH6Q9C0G6 4158 aa10.36□□□□□ -0.75
VMP1-206ENST00000587945 PITX3O75364 302 aa10.35□□□□□ -0.75
VMP1-206ENST00000587945 IGKV3-20P01619 116 aa10.35□□□□□ -0.75
VMP1-206ENST00000587945 GPX4P36969 197 aaPredicted RBP10.35□□□□□ -0.75
VMP1-206ENST00000587945 LYZP61626 148 aa10.35□□□□□ -0.75
VMP1-206ENST00000587945 SRPXP78539 464 aa10.35□□□□□ -0.75
VMP1-206ENST00000587945 OR2F1Q13607 317 aa10.35□□□□□ -0.75
VMP1-206ENST00000587945 GDF5OSQ5U4N7 250 aa10.35□□□□□ -0.75
VMP1-206ENST00000587945 ZNF767PQ75MW2 155 aa10.35□□□□□ -0.75
VMP1-206ENST00000587945 SLC35E1Q96K37 410 aa10.35□□□□□ -0.75
VMP1-206ENST00000587945 WDR12Q9GZL7 423 aaKnown RBP10.35□□□□□ -0.75
VMP1-206ENST00000587945 PAIP2BQ9ULR5 123 aaKnown RBP10.35□□□□□ -0.75
VMP1-206ENST00000587945 C11orf94C9JXX5 98 aa10.34□□□□□ -0.75
VMP1-206ENST00000587945 VAMP1P23763 118 aa10.34□□□□□ -0.75
VMP1-206ENST00000587945 FAUP35544 74 aaKnown RBP10.34□□□□□ -0.75
VMP1-206ENST00000587945 FXYD7P58549 80 aa10.34□□□□□ -0.75
VMP1-206ENST00000587945 LINC00052Q96N35 136 aa10.34□□□□□ -0.75
VMP1-206ENST00000587945 SEPSECSQ9HD40 501 aaKnown RBP10.34□□□□□ -0.75
VMP1-206ENST00000587945 V9GYH0 126 aa10.34□□□□□ -0.75
VMP1-206ENST00000587945 TRAV10A0A0B4J240 114 aa10.33□□□□□ -0.76
VMP1-206ENST00000587945 HLA-DRB4P13762 266 aa10.33□□□□□ -0.76
VMP1-206ENST00000587945 NKX2-1P43699 371 aaPredicted RBP10.33□□□□□ -0.76
VMP1-206ENST00000587945 ATP5IP56385 69 aaPredicted RBP10.33□□□□□ -0.76
VMP1-206ENST00000587945 TCTAP57738 103 aa10.33□□□□□ -0.76
VMP1-206ENST00000587945 NUTF2P61970 127 aaKnown RBP10.33□□□□□ -0.76
VMP1-206ENST00000587945 C12orf74Q32Q52 190 aa10.33□□□□□ -0.76
VMP1-206ENST00000587945 TMEM128Q5BJH2 165 aa10.33□□□□□ -0.76
VMP1-206ENST00000587945 OR8G2PQ6IF36 304 aa10.33□□□□□ -0.76
VMP1-206ENST00000587945 TOMM5Q8N4H5 51 aa10.33□□□□□ -0.76
VMP1-206ENST00000587945 MAGT1Q9H0U3 335 aa10.33□□□□□ -0.76
VMP1-206ENST00000587945 HLA-DRB4X5D2U9 266 aa10.33□□□□□ -0.76
VMP1-206ENST00000587945 IGKV1OR2-108A0A075B7D4 117 aa10.32□□□□□ -0.76
VMP1-206ENST00000587945 DUXBA0A1W2PPF3 345 aa10.32□□□□□ -0.76
VMP1-206ENST00000587945 NUP62P37198 522 aaPredicted RBP10.32□□□□□ -0.76
VMP1-206ENST00000587945 AP3S2P59780 193 aa10.32□□□□□ -0.76
VMP1-206ENST00000587945 RAB11AP62491 216 aa10.32□□□□□ -0.76
VMP1-206ENST00000587945 ZNF79Q15937 498 aa10.32□□□□□ -0.76
VMP1-206ENST00000587945 CENPSQ8N2Z9 138 aa10.32□□□□□ -0.76
VMP1-206ENST00000587945 PPP1R14BQ96C90 147 aa10.32□□□□□ -0.76
VMP1-206ENST00000587945 C1QTNF4Q9BXJ3 329 aa10.32□□□□□ -0.76
VMP1-206ENST00000587945 PFDN2Q9UHV9 154 aa10.32□□□□□ -0.76
VMP1-206ENST00000587945 IGHV4-4A0A075B6R2 117 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 SNRPGP15A8MWD9 76 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 WRBO00258 174 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 SOCS3O14543 225 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 SFT2D2O95562 160 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 HOXB5P09067 269 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 PPP1R1AQ13522 171 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 LRTM2Q8N967 370 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 TRGV9Q99603 122 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 SCRT1Q9BWW7 348 aa10.31□□□□□ -0.76
VMP1-206ENST00000587945 IGHV3OR16-12A0A075B7B8 117 aa10.3□□□□□ -0.76
VMP1-206ENST00000587945 DEFB131BA0A096LNP1 70 aa10.3□□□□□ -0.76
VMP1-206ENST00000587945 CCDC160A6NGH7 325 aa10.3□□□□□ -0.76
VMP1-206ENST00000587945 FABP1P07148 127 aa10.3□□□□□ -0.76
VMP1-206ENST00000587945 SLC25A6P12236 298 aa10.3□□□□□ -0.76
VMP1-206ENST00000587945 ID1P41134 155 aa10.3□□□□□ -0.76
VMP1-206ENST00000587945 EMP1P54849 157 aa10.3□□□□□ -0.76
VMP1-206ENST00000587945 C1orf194Q5T5A4 169 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms