RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 RTL8CO15255 209 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 NXPH3O95157 252 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 RD3LP0DJH9 198 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 CTF1Q16619 201 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 LGALS9BQ3B8N2 356 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 NMSQ5H8A3 153 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 TMEM268Q5VZI3 342 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 ZNF767PQ75MW2 155 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 NPIPB3Q92617 1050 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 IL22RA2Q969J5 263 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 FAM210BQ96KR6 192 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 CLUHP3Q96NS8 147 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 TMEM56-RWDD3S4R434 201 aa8.5□□□□□ -1.05
LIG3-209ENST00000586435 NACAE9PAV3 2078 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 DNAH17Q9UFH2 4485 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 PRSS29PA6NIE9 313 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 SPART-AS1P0CW21 52 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 PSG1P11464 419 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 OR8G2PQ6IF36 304 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 OR51G1Q8NGK1 321 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 RNF125Q96EQ8 232 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 ACY3Q96HD9 319 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 SCRT1Q9BWW7 348 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 SAV1Q9H4B6 383 aaPredicted RBP8.49□□□□□ -1.05
LIG3-209ENST00000586435 PFDN2Q9UHV9 154 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 GPR132Q9UNW8 380 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 U3KQ87 197 aa8.49□□□□□ -1.05
LIG3-209ENST00000586435 DISC1C4P0D8 188 aa8.48□□□□□ -1.05
LIG3-209ENST00000586435 SULT1A3P0DMM9 295 aa8.48□□□□□ -1.05
LIG3-209ENST00000586435 SULT1A4P0DMN0 295 aa8.48□□□□□ -1.05
LIG3-209ENST00000586435 FAAP20Q6NZ36 180 aa8.48□□□□□ -1.05
LIG3-209ENST00000586435 FOXI2Q6ZQN5 318 aa8.48□□□□□ -1.05
LIG3-209ENST00000586435 SMIM4Q8WVI0 70 aa8.48□□□□□ -1.05
LIG3-209ENST00000586435 NAA50Q9GZZ1 169 aaKnown RBP8.48□□□□□ -1.05
LIG3-209ENST00000586435 HSPB7Q9UBY9 170 aa8.48□□□□□ -1.05
LIG3-209ENST00000586435 RFNGQ9Y644 331 aa8.48□□□□□ -1.05
LIG3-209ENST00000586435 SOCS3O14543 225 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 IFNA10P01566 189 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 AKAIN1P0CW23 69 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 PSMB3P49720 205 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 ATP5IP56385 69 aaPredicted RBP8.47□□□□□ -1.05
LIG3-209ENST00000586435 OXA1LQ15070 435 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 C1orf194Q5T5A4 169 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 GDF5OSQ5U4N7 250 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 SPATA31B1PQ5VZV4 182 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 ZNF709Q8N972 641 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 OR4C16Q8NGL9 310 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 PRRT1Q99946 306 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 MIXL1Q9H2W2 232 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 DKK2Q9UBU2 259 aa8.47□□□□□ -1.05
LIG3-209ENST00000586435 A0A0B4J2A0 478 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 CTDSPLO15194 276 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 ID1P41134 155 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 CCR6P51684 374 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 PAX9P55771 341 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 SUPT4H1P63272 117 aaKnown RBP8.46□□□□□ -1.06
LIG3-209ENST00000586435 KLF9Q13886 244 aaPredicted RBP8.46□□□□□ -1.06
LIG3-209ENST00000586435 ZNF79Q15937 498 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 SAMD13Q5VXD3 122 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 Q6ZR54 194 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 LGI3Q8N145 548 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 DTD1Q8TEA8 209 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 NIPSNAP3BQ9BS92 247 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 WDR12Q9GZL7 423 aaKnown RBP8.46□□□□□ -1.06
LIG3-209ENST00000586435 RABL2AQ9UBK7 228 aaPredicted RBP8.46□□□□□ -1.06
LIG3-209ENST00000586435 SHPKQ9UHJ6 478 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 RABL2BQ9UNT1 228 aa8.46□□□□□ -1.06
LIG3-209ENST00000586435 DNAH11Q96DT5 4516 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 IGKV1D-37A0A075B6S9 117 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 M0R2N4 97 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 ISLRO14498 428 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 IFNA21P01568 189 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 GPX4P36969 197 aaPredicted RBP8.45□□□□□ -1.06
LIG3-209ENST00000586435 SMCO1Q147U7 214 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 RNF212Q495C1 297 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 FAM222AQ5U5X8 452 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 UBE2DNLQ8IWF7 75 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 OR51S1Q8NGJ8 323 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 SLC35E1Q96K37 410 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 PBDC1Q9BVG4 233 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 KCNIP3Q9Y2W7 256 aa8.45□□□□□ -1.06
LIG3-209ENST00000586435 ZFP92A6NM28 416 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 A8MTW9 85 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 RGS5O15539 181 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 IGKV3-20P01619 116 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 FABP1P07148 127 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 SMIM18P0DKX4 95 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 EMP1P54849 157 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 FXYD7P58549 80 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 DEFB1P60022 68 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 GAMTQ14353 236 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 COQ8AQ8NI60 647 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 LINC00052Q96N35 136 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 SCGB3A2Q96PL1 93 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 RBKSQ9H477 322 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 GOLT1BQ9Y3E0 138 aa8.44□□□□□ -1.06
LIG3-209ENST00000586435 IGHV3OR16-12A0A075B7B8 117 aa8.43□□□□□ -1.06
LIG3-209ENST00000586435 PIGBOS1A0A0B4J2F0 54 aa8.43□□□□□ -1.06
LIG3-209ENST00000586435 ANKRD20A5PA0PJZ0 165 aa8.43□□□□□ -1.06
LIG3-209ENST00000586435 SNRPGP15A8MWD9 76 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms