RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SEC11CQ9BY50 192 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 MRPL32Q9BYC8 188 aaKnown RBP8.22□□□□□ -1.09
SS18-217ENST00000580958 SLC35B3Q9H1N7 401 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 DNAJC4Q9NNZ3 241 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 MANBALQ9NQG1 85 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 YAE1D1Q9NRH1 226 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 TECRQ9NZ01 308 aaKnown RBP8.22□□□□□ -1.09
SS18-217ENST00000580958 VPREB3Q9UKI3 123 aa8.22□□□□□ -1.09
SS18-217ENST00000580958 CARHSP1Q9Y2V2 147 aaKnown RBP8.22□□□□□ -1.09
SS18-217ENST00000580958 TRAV30A0A087WSZ9 112 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 TRBV9A0A0B4J1U6 114 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 TRAV5A0A0B4J249 113 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 F8W735 103 aaPredicted RBP8.21□□□□□ -1.1
SS18-217ENST00000580958 HOXA3O43365 443 aaPredicted RBP8.21□□□□□ -1.1
SS18-217ENST00000580958 GNG7O60262 68 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 PAGE4O60829 102 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 HYPMO75409 117 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 HSPB1P04792 205 aaKnown RBP8.21□□□□□ -1.1
SS18-217ENST00000580958 IGF1P05019 195 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 FABP1P07148 127 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 C8orf88P0DMB2 117 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 PSG1P11464 419 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 ORM2P19652 201 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 PSMB3P49720 205 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 UBE2G2P60604 165 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 LYZP61626 148 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 GUCA2BQ16661 112 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 MORN5Q5VZ52 161 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 CCDC28AQ8IWP9 274 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 OR1B1Q8NGR6 318 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 VN1R17PQ8TDU5 208 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 NOL4LQ96MY1 436 aaPredicted RBP8.21□□□□□ -1.1
SS18-217ENST00000580958 PRDM13Q9H4Q3 707 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 VAX2Q9UIW0 290 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 MXRA5Q9NR99 2828 aa8.21□□□□□ -1.1
SS18-217ENST00000580958 AP4M1O00189 453 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 SCO1O75880 301 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 TOMM40O96008 361 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 RD3LP0DJH9 198 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 SRP14P37108 136 aaKnown RBP8.2□□□□□ -1.1
SS18-217ENST00000580958 CEBPGP53567 150 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 TAS2R45P59539 299 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 PLP1P60201 277 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 C15orf32Q32M92 178 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 CYB561D1Q8N8Q1 229 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 NECAP1Q8NC96 275 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 ZNF502Q8TBZ5 544 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 ZNF503Q96F45 646 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 FAM167A-AS1Q96KT0 104 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 UHRF2Q96PU4 802 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 TXN2Q99757 166 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 SLC25A2Q9BXI2 301 aa8.2□□□□□ -1.1
SS18-217ENST00000580958 ELOA3CA0A087WX78 387 aaPredicted RBP8.19□□□□□ -1.1
SS18-217ENST00000580958 OR2T8A6NH00 312 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 OR7C2O60412 319 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 TRGV3P03979 118 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 FCGR2BP31994 310 aaPredicted RBP8.19□□□□□ -1.1
SS18-217ENST00000580958 TAGLN2P37802 199 aaKnown RBP8.19□□□□□ -1.1
SS18-217ENST00000580958 CD81P60033 236 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 YPEL3P61236 119 aaPredicted RBP8.19□□□□□ -1.1
SS18-217ENST00000580958 MEF2BQ02080 365 aaPredicted RBP8.19□□□□□ -1.1
SS18-217ENST00000580958 ATP5G2Q06055 141 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 TMEM95Q3KNT9 176 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 SOHLH1Q5JUK2 328 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 ATRAIDQ6UW56 229 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 PQLC2Q6ZP29 291 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 LINC00305Q7Z4B0 112 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 OR5AU1Q8NGC0 362 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 OR51G1Q8NGK1 321 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 OR4F5Q8NH21 305 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 EEF1AKMT3Q96AZ1 226 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 OR4F4Q96R69 305 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 HIGD1AQ9Y241 93 aa8.19□□□□□ -1.1
SS18-217ENST00000580958 WI2-2373I1.2A0A1W2PRP0 233 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 FAM223BA6NKX1 122 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 C11orf94C9JXX5 98 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 SCGB2A1O75556 95 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 PPIFP30405 207 aaKnown RBP8.18□□□□□ -1.1
SS18-217ENST00000580958 GPR183P32249 361 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 ATP5G3P48201 142 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 TPPP2P59282 170 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 KIAA0141Q14154 515 aaPredicted RBP8.18□□□□□ -1.1
SS18-217ENST00000580958 CST9LP1Q5W188 147 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 FAM223AQ8IWN6 122 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 SVBPQ8N300 66 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 Q8WTZ3 238 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 RNF125Q96EQ8 232 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 CHRDL1Q9BU40 450 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 TMEM167BQ9NRX6 74 aa8.18□□□□□ -1.1
SS18-217ENST00000580958 YTHDF2Q9Y5A9 579 aaKnown RBP8.18□□□□□ -1.1
SS18-217ENST00000580958 FAM74A7A6NL05 159 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 H3BUA1 57 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 IL4P05112 153 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 CTSGP08311 255 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 OR10J4P0C629 311 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 PYYP10082 97 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 PF4V1P10720 104 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 ADMP35318 185 aa8.17□□□□□ -1.1
SS18-217ENST00000580958 UBE2L3P68036 154 aaKnown RBP8.17□□□□□ -1.1
SS18-217ENST00000580958 CFHR3Q02985 330 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms