RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 C16orf54Q6UWD8 224 aa17.65■□□□□ 0.42
SHMT1-206ENST00000579558 LINC00299Q6ZSB3 139 aa17.65■□□□□ 0.42
SHMT1-206ENST00000579558 FAM24BQ8N5W8 94 aa17.65■□□□□ 0.42
SHMT1-206ENST00000579558 OR51G1Q8NGK1 321 aa17.65■□□□□ 0.42
SHMT1-206ENST00000579558 IGKV1D-37A0A075B6S9 117 aa17.64■□□□□ 0.41
SHMT1-206ENST00000579558 HELTA6NFD8 242 aa17.64■□□□□ 0.41
SHMT1-206ENST00000579558 H3BP45 60 aa17.64■□□□□ 0.41
SHMT1-206ENST00000579558 NKX2-1P43699 371 aaPredicted RBP17.64■□□□□ 0.41
SHMT1-206ENST00000579558 POLR2GP62487 172 aaKnown RBP eCLIP17.64■□□□□ 0.41
SHMT1-206ENST00000579558 ID3Q02535 119 aa17.64■□□□□ 0.41
SHMT1-206ENST00000579558 ZNF90Q03938 601 aa17.64■□□□□ 0.41
SHMT1-206ENST00000579558 OR4D5Q8NGN0 318 aa17.64■□□□□ 0.41
SHMT1-206ENST00000579558 GLMPQ8WWB7 406 aa17.64■□□□□ 0.41
SHMT1-206ENST00000579558 RNF125Q96EQ8 232 aa17.64■□□□□ 0.41
SHMT1-206ENST00000579558 TP53TG1Q9Y2A0 90 aa17.64■□□□□ 0.41
SHMT1-206ENST00000579558 K7EQG2 157 aa17.63■□□□□ 0.41
SHMT1-206ENST00000579558 SPRY2O43597 315 aa17.63■□□□□ 0.41
SHMT1-206ENST00000579558 TCRBP04435 133 aa17.63■□□□□ 0.41
SHMT1-206ENST00000579558 FABP1P07148 127 aa17.63■□□□□ 0.41
SHMT1-206ENST00000579558 LEMD1Q68G75 181 aa17.63■□□□□ 0.41
SHMT1-206ENST00000579558 MITD1Q8WV92 249 aa17.63■□□□□ 0.41
SHMT1-206ENST00000579558 S100ZQ8WXG8 99 aa17.63■□□□□ 0.41
SHMT1-206ENST00000579558 PBDC1Q9BVG4 233 aa17.63■□□□□ 0.41
SHMT1-206ENST00000579558 STRAPQ9Y3F4 350 aaKnown RBP17.63■□□□□ 0.41
SHMT1-206ENST00000579558 TRAV6A0A075B6T7 132 aa17.62■□□□□ 0.41
SHMT1-206ENST00000579558 A6NHS1 94 aa17.61■□□□□ 0.41
SHMT1-206ENST00000579558 PRSS46E5RG02 174 aa17.61■□□□□ 0.41
SHMT1-206ENST00000579558 SSSCA1O60232 199 aa17.61■□□□□ 0.41
SHMT1-206ENST00000579558 AP2S1P53680 142 aaPredicted RBP17.61■□□□□ 0.41
SHMT1-206ENST00000579558 IAH1Q2TAA2 248 aaPredicted RBP17.61■□□□□ 0.41
SHMT1-206ENST00000579558 DCANP1Q8TF63 244 aa17.61■□□□□ 0.41
SHMT1-206ENST00000579558 TRGV9Q99603 122 aa17.61■□□□□ 0.41
SHMT1-206ENST00000579558 CSTL1Q9H114 145 aa17.61■□□□□ 0.41
SHMT1-206ENST00000579558 NUDT15Q9NV35 164 aa17.61■□□□□ 0.41
SHMT1-206ENST00000579558 PSENENQ9NZ42 101 aa17.61■□□□□ 0.41
SHMT1-206ENST00000579558 BUB3O43684 328 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 SCGB1D2O95969 90 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 ZNF688P0C7X2 276 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 NUP62P37198 522 aaPredicted RBP17.6■□□□□ 0.41
SHMT1-206ENST00000579558 LYZP61626 148 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 OR2F1Q13607 317 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 OR8G2PQ6IF36 304 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 THAP8Q8NA92 274 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 IL17DQ8TAD2 202 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 RNF183Q96D59 192 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 PFDN2Q9UHV9 154 aa17.6■□□□□ 0.41
SHMT1-206ENST00000579558 IGKV1OR2-108A0A075B7D4 117 aa17.59■□□□□ 0.41
SHMT1-206ENST00000579558 ZBTB8BQ8NAP8 495 aaPredicted RBP17.59■□□□□ 0.41
SHMT1-206ENST00000579558 SNRPGP15A8MWD9 76 aa17.58■□□□□ 0.4
SHMT1-206ENST00000579558 SIGLEC15Q6ZMC9 328 aa17.58■□□□□ 0.4
SHMT1-206ENST00000579558 ACOT7LQ6ZUV0 252 aa17.58■□□□□ 0.4
SHMT1-206ENST00000579558 GSKIPQ9P0R6 139 aa17.58■□□□□ 0.4
SHMT1-206ENST00000579558 AKR1C1Q04828 323 aa17.57■□□□□ 0.4
SHMT1-206ENST00000579558 MZT2BQ6NZ67 158 aa17.57■□□□□ 0.4
SHMT1-206ENST00000579558 STHQ8IWL8 128 aa17.57■□□□□ 0.4
SHMT1-206ENST00000579558 SMIM8Q96KF7 97 aa17.57■□□□□ 0.4
SHMT1-206ENST00000579558 SEC22CQ9BRL7 303 aa17.57■□□□□ 0.4
SHMT1-206ENST00000579558 DYNC2H1Q8NCM8 4307 aaKnown RBP17.57■□□□□ 0.4
SHMT1-206ENST00000579558 FAM240BA0A1B0GVZ2 78 aa17.56■□□□□ 0.4
SHMT1-206ENST00000579558 CCSO14618 274 aa17.56■□□□□ 0.4
SHMT1-206ENST00000579558 H2AFB2P0C5Z0 115 aa17.56■□□□□ 0.4
SHMT1-206ENST00000579558 ZNF431Q8TF32 576 aaPredicted RBP17.56■□□□□ 0.4
SHMT1-206ENST00000579558 NRN1Q9NPD7 142 aa17.56■□□□□ 0.4
SHMT1-206ENST00000579558 TBC1D24Q9ULP9 559 aa17.56■□□□□ 0.4
SHMT1-206ENST00000579558 A0A0J9YWU9 116 aa17.55■□□□□ 0.4
SHMT1-206ENST00000579558 PAX9P55771 341 aa17.55■□□□□ 0.4
SHMT1-206ENST00000579558 PPP1R14BQ96C90 147 aa17.55■□□□□ 0.4
SHMT1-206ENST00000579558 RAB40CQ96S21 281 aa17.55■□□□□ 0.4
SHMT1-206ENST00000579558 WDR12Q9GZL7 423 aaKnown RBP17.55■□□□□ 0.4
SHMT1-206ENST00000579558 PTTG2Q9NZH5 202 aa17.55■□□□□ 0.4
SHMT1-206ENST00000579558 SMCO3A2RU48 225 aa17.54■□□□□ 0.4
SHMT1-206ENST00000579558 KNCNA6PVL3 124 aa17.54■□□□□ 0.4
SHMT1-206ENST00000579558 CFDP00746 253 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-206ENST00000579558 CA1P00915 261 aaPredicted RBP17.54■□□□□ 0.4
SHMT1-206ENST00000579558 ASAH1Q13510 395 aa17.54■□□□□ 0.4
SHMT1-206ENST00000579558 ZNF846Q147U1 533 aa17.54■□□□□ 0.4
SHMT1-206ENST00000579558 PSMG4Q5JS54 123 aa17.54■□□□□ 0.4
SHMT1-206ENST00000579558 RCL1Q9Y2P8 373 aaKnown RBP17.54■□□□□ 0.4
SHMT1-206ENST00000579558 STARD9Q9P2P6 4700 aa17.53■□□□□ 0.4
SHMT1-206ENST00000579558 PMS2P5A8MQ11 134 aa17.53■□□□□ 0.4
SHMT1-206ENST00000579558 FAM25EA8MYX2 175 aa17.53■□□□□ 0.4
SHMT1-206ENST00000579558 SNRPD3P62318 126 aaKnown RBP17.53■□□□□ 0.4
SHMT1-206ENST00000579558 TMEM144Q7Z5S9 345 aa17.53■□□□□ 0.4
SHMT1-206ENST00000579558 GATAD1Q8WUU5 269 aa17.53■□□□□ 0.4
SHMT1-206ENST00000579558 FBXL17Q9UF56 701 aa17.53■□□□□ 0.4
SHMT1-206ENST00000579558 CCNKO75909 580 aa17.52■□□□□ 0.4
SHMT1-206ENST00000579558 MBPP02686 304 aaPredicted RBP17.52■□□□□ 0.4
SHMT1-206ENST00000579558 METTL15P1P0C7V9 234 aa17.52■□□□□ 0.4
SHMT1-206ENST00000579558 TAS2R30P59541 319 aa17.52■□□□□ 0.4
SHMT1-206ENST00000579558 ACTL10Q5JWF8 245 aa17.52■□□□□ 0.4
SHMT1-206ENST00000579558 C1orf194Q5T5A4 169 aa17.52■□□□□ 0.4
SHMT1-206ENST00000579558 TMEM14EPQ6UXP3 125 aa17.52■□□□□ 0.4
SHMT1-206ENST00000579558 TRPT1Q86TN4 253 aaKnown RBP17.52■□□□□ 0.4
SHMT1-206ENST00000579558 C12orf45Q8N5I9 185 aaPredicted RBP17.52■□□□□ 0.4
SHMT1-206ENST00000579558 BPIFCQ8NFQ6 507 aa17.52■□□□□ 0.4
SHMT1-206ENST00000579558 CSMD3Q7Z407 3707 aa17.51■□□□□ 0.39
SHMT1-206ENST00000579558 C5orf51A6NDU8 294 aa17.51■□□□□ 0.39
SHMT1-206ENST00000579558 TSC22D2O75157 780 aa17.51■□□□□ 0.39
SHMT1-206ENST00000579558 UPK1BO75841 260 aa17.51■□□□□ 0.39
SHMT1-206ENST00000579558 GATA2P23769 480 aaPredicted RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms