RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 RAB40CQ96S21 281 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 HRH4Q9H3N8 390 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 NRN1Q9NPD7 142 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 HSPB7Q9UBY9 170 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 PFDN2Q9UHV9 154 aa9.96□□□□□ -0.82
CCDC40-216ENST00000576241 C11orf94C9JXX5 98 aa9.95□□□□□ -0.82
CCDC40-216ENST00000576241 FAM90A26D6RGX4 464 aa9.95□□□□□ -0.82
CCDC40-216ENST00000576241 DEDDO75618 318 aa9.95□□□□□ -0.82
CCDC40-216ENST00000576241 GIG44P09565 113 aaPredicted RBP9.95□□□□□ -0.82
CCDC40-216ENST00000576241 TNFSF8P32971 234 aa9.95□□□□□ -0.82
CCDC40-216ENST00000576241 NUTF2P61970 127 aaKnown RBP9.95□□□□□ -0.82
CCDC40-216ENST00000576241 KLF9Q13886 244 aaPredicted RBP9.95□□□□□ -0.82
CCDC40-216ENST00000576241 SIGLEC15Q6ZMC9 328 aa9.95□□□□□ -0.82
CCDC40-216ENST00000576241 LYZL2Q7Z4W2 148 aa9.95□□□□□ -0.82
CCDC40-216ENST00000576241 OR1S1Q8NH92 325 aa9.95□□□□□ -0.82
CCDC40-216ENST00000576241 SLIRPQ9GZT3 109 aaKnown RBP9.95□□□□□ -0.82
CCDC40-216ENST00000576241 RBKSQ9H477 322 aa9.95□□□□□ -0.82
CCDC40-216ENST00000576241 ZFP92A6NM28 416 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 ZNF705EA8MWA4 302 aaPredicted RBP9.94□□□□□ -0.82
CCDC40-216ENST00000576241 BUB3O43684 328 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 PSG1P11464 419 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 ATP5IP56385 69 aaPredicted RBP9.94□□□□□ -0.82
CCDC40-216ENST00000576241 AP3S2P59780 193 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 SUPT4H1P63272 117 aaKnown RBP9.94□□□□□ -0.82
CCDC40-216ENST00000576241 OR51G1Q8NGK1 321 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 MCFD2Q8NI22 146 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 RNF125Q96EQ8 232 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 PBDC1Q9BVG4 233 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 C1QTNF4Q9BXJ3 329 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 SEPSECSQ9HD40 501 aaKnown RBP9.94□□□□□ -0.82
CCDC40-216ENST00000576241 CLEC5AQ9NY25 188 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 TBC1D24Q9ULP9 559 aa9.94□□□□□ -0.82
CCDC40-216ENST00000576241 IGLL5B9A064 214 aa9.93□□□□□ -0.82
CCDC40-216ENST00000576241 H3BMQ9 156 aa9.93□□□□□ -0.82
CCDC40-216ENST00000576241 FABP1P07148 127 aa9.93□□□□□ -0.82
CCDC40-216ENST00000576241 RBMY1A1P0DJD3 496 aaKnown RBP9.93□□□□□ -0.82
CCDC40-216ENST00000576241 RBMY1CP0DJD4 496 aa9.93□□□□□ -0.82
CCDC40-216ENST00000576241 MED14OSP0DP75 135 aa9.93□□□□□ -0.82
CCDC40-216ENST00000576241 RBMY1FQ15415 496 aaKnown RBP9.93□□□□□ -0.82
CCDC40-216ENST00000576241 OR8G2PQ6IF36 304 aa9.93□□□□□ -0.82
CCDC40-216ENST00000576241 TMED4Q7Z7H5 227 aa9.93□□□□□ -0.82
CCDC40-216ENST00000576241 SLC35E1Q96K37 410 aa9.93□□□□□ -0.82
CCDC40-216ENST00000576241 SOSTQ9BQB4 213 aa9.93□□□□□ -0.82
CCDC40-216ENST00000576241 DUXBA0A1W2PPF3 345 aa9.92□□□□□ -0.82
CCDC40-216ENST00000576241 HLA-DMBP28068 263 aa9.92□□□□□ -0.82
CCDC40-216ENST00000576241 GPX4P36969 197 aaPredicted RBP9.92□□□□□ -0.82
CCDC40-216ENST00000576241 PYDC2Q56P42 97 aa9.92□□□□□ -0.82
CCDC40-216ENST00000576241 X6R8D5 127 aa9.92□□□□□ -0.82
CCDC40-216ENST00000576241 TRAV10A0A0B4J240 114 aa9.91□□□□□ -0.82
CCDC40-216ENST00000576241 VAMP1P23763 118 aa9.91□□□□□ -0.82
CCDC40-216ENST00000576241 NKX2-1P43699 371 aaPredicted RBP9.91□□□□□ -0.82
CCDC40-216ENST00000576241 RAB11AP62491 216 aa9.91□□□□□ -0.82
CCDC40-216ENST00000576241 GAMTQ14353 236 aa9.91□□□□□ -0.82
CCDC40-216ENST00000576241 TMEM128Q5BJH2 165 aa9.91□□□□□ -0.82
CCDC40-216ENST00000576241 TOMM5Q8N4H5 51 aa9.91□□□□□ -0.82
CCDC40-216ENST00000576241 CSNK1G2-AS1Q8NCQ2 148 aa9.91□□□□□ -0.82
CCDC40-216ENST00000576241 XCL2Q9UBD3 114 aa9.91□□□□□ -0.82
CCDC40-216ENST00000576241 H3BMM0 161 aa9.9□□□□□ -0.82
CCDC40-216ENST00000576241 ID1P41134 155 aa9.9□□□□□ -0.82
CCDC40-216ENST00000576241 LYZP61626 148 aa9.9□□□□□ -0.82
CCDC40-216ENST00000576241 ZNF90Q03938 601 aa9.9□□□□□ -0.82
CCDC40-216ENST00000576241 Q6ZTC4 211 aa9.9□□□□□ -0.82
CCDC40-216ENST00000576241 PPP1R14BQ96C90 147 aa9.9□□□□□ -0.82
CCDC40-216ENST00000576241 PAIP2BQ9ULR5 123 aaKnown RBP9.9□□□□□ -0.82
CCDC40-216ENST00000576241 ELOA3CA0A087WX78 387 aaPredicted RBP9.89□□□□□ -0.83
CCDC40-216ENST00000576241 SNRPGP15A8MWD9 76 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 MED6O75586 246 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 IAPPP10997 89 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 HLA-DRB4P13762 266 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 C1orf194Q5T5A4 169 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 COQ8AQ8NI60 647 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 TRIM63Q969Q1 353 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 LINC00052Q96N35 136 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 CIB3Q96Q77 187 aaPredicted RBP9.89□□□□□ -0.83
CCDC40-216ENST00000576241 SLC25A21Q9BQT8 299 aaPredicted RBP9.89□□□□□ -0.83
CCDC40-216ENST00000576241 APLNQ9ULZ1 77 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 HLA-DRB4X5D2U9 266 aa9.89□□□□□ -0.83
CCDC40-216ENST00000576241 PKHD1P08F94 4074 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 IGKV1D-37A0A075B6S9 117 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 PITX3O75364 302 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 SLC25A6P12236 298 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 S100A5P33763 92 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 PSMB3P49720 205 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 RPP30P78346 268 aaKnown RBP9.88□□□□□ -0.83
CCDC40-216ENST00000576241 PRR20EP86478 221 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 PRR20CP86479 221 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 PRR20DP86480 221 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 PRR20BP86481 221 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 PRR20AP86496 221 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 OR2F1Q13607 317 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 LRTM2Q8N967 370 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 DEDD2Q8WXF8 326 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 TRGV9Q99603 122 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 TMED3Q9Y3Q3 217 aa9.88□□□□□ -0.83
CCDC40-216ENST00000576241 VPS13DQ5THJ4 4388 aa9.87□□□□□ -0.83
CCDC40-216ENST00000576241 IGHV4-4A0A075B6R2 117 aa9.87□□□□□ -0.83
CCDC40-216ENST00000576241 CCDC160A6NGH7 325 aa9.87□□□□□ -0.83
CCDC40-216ENST00000576241 IGKV3-20P01619 116 aa9.87□□□□□ -0.83
CCDC40-216ENST00000576241 SAMD13Q5VXD3 122 aa9.87□□□□□ -0.83
CCDC40-216ENST00000576241 FOXI2Q6ZQN5 318 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms