RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 HERC2O95714 4834 aa13.1□□□□□ -0.31
CHD3-214ENST00000572579 HECTD4Q9Y4D8 3996 aa13.09□□□□□ -0.31
CHD3-214ENST00000572579 FAM90A26D6RGX4 464 aa13.09□□□□□ -0.31
CHD3-214ENST00000572579 IFNA10P01566 189 aa13.09□□□□□ -0.31
CHD3-214ENST00000572579 ZNF90Q03938 601 aa13.09□□□□□ -0.31
CHD3-214ENST00000572579 GAMTQ14353 236 aa13.09□□□□□ -0.31
CHD3-214ENST00000572579 LGI3Q8N145 548 aa13.09□□□□□ -0.31
CHD3-214ENST00000572579 APLNQ9ULZ1 77 aa13.09□□□□□ -0.31
CHD3-214ENST00000572579 DNAH2Q9P225 4427 aa13.09□□□□□ -0.31
CHD3-214ENST00000572579 HELTA6NFD8 242 aa13.08□□□□□ -0.32
CHD3-214ENST00000572579 SPP1P10451 314 aa13.08□□□□□ -0.32
CHD3-214ENST00000572579 ETFRF1Q6IPR1 90 aa13.08□□□□□ -0.32
CHD3-214ENST00000572579 MORN3Q6PF18 240 aaPredicted RBP13.08□□□□□ -0.32
CHD3-214ENST00000572579 MCFD2Q8NI22 146 aa13.08□□□□□ -0.32
CHD3-214ENST00000572579 NARS2Q96I59 477 aaKnown RBP13.08□□□□□ -0.32
CHD3-214ENST00000572579 MFFQ9GZY8 342 aa13.08□□□□□ -0.32
CHD3-214ENST00000572579 V9GYH0 126 aa13.08□□□□□ -0.32
CHD3-214ENST00000572579 FAT2Q9NYQ8 4349 aa13.08□□□□□ -0.32
CHD3-214ENST00000572579 H3BMM0 161 aa13.07□□□□□ -0.32
CHD3-214ENST00000572579 SCGB2A1O75556 95 aa13.07□□□□□ -0.32
CHD3-214ENST00000572579 ZNF79Q15937 498 aa13.07□□□□□ -0.32
CHD3-214ENST00000572579 SCGB3A2Q96PL1 93 aa13.07□□□□□ -0.32
CHD3-214ENST00000572579 WDR12Q9GZL7 423 aaKnown RBP13.07□□□□□ -0.32
CHD3-214ENST00000572579 HRH4Q9H3N8 390 aa13.07□□□□□ -0.32
CHD3-214ENST00000572579 IGKV1OR2-108A0A075B7D4 117 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 IFNA4P05014 189 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 HLA-DMBP28068 263 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 AP2S1P53680 142 aaPredicted RBP13.06□□□□□ -0.32
CHD3-214ENST00000572579 GDF5OSQ5U4N7 250 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 SIGLEC15Q6ZMC9 328 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 C2CD4CQ8TF44 421 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 RNF125Q96EQ8 232 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 C17orf77Q96MU5 243 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 NRN1Q9NPD7 142 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 CELA1Q9UNI1 258 aa13.06□□□□□ -0.32
CHD3-214ENST00000572579 MIFP14174 115 aa13.05□□□□□ -0.32
CHD3-214ENST00000572579 GPX4P36969 197 aaPredicted RBP13.05□□□□□ -0.32
CHD3-214ENST00000572579 TMEM41BQ5BJD5 291 aa13.05□□□□□ -0.32
CHD3-214ENST00000572579 Q6ZTC4 211 aa13.05□□□□□ -0.32
CHD3-214ENST00000572579 TMED4Q7Z7H5 227 aa13.05□□□□□ -0.32
CHD3-214ENST00000572579 NOXA1Q86UR1 476 aa13.05□□□□□ -0.32
CHD3-214ENST00000572579 SCRT1Q9BWW7 348 aa13.05□□□□□ -0.32
CHD3-214ENST00000572579 SEPSECSQ9HD40 501 aaKnown RBP13.05□□□□□ -0.32
CHD3-214ENST00000572579 CACFD1Q9UGQ2 172 aa13.05□□□□□ -0.32
CHD3-214ENST00000572579 TBC1D24Q9ULP9 559 aa13.05□□□□□ -0.32
CHD3-214ENST00000572579 DNAH17Q9UFH2 4485 aa13.05□□□□□ -0.32
CHD3-214ENST00000572579 IGLL5B9A064 214 aa13.04□□□□□ -0.32
CHD3-214ENST00000572579 SOCS3O14543 225 aa13.04□□□□□ -0.32
CHD3-214ENST00000572579 LRTM2Q8N967 370 aa13.04□□□□□ -0.32
CHD3-214ENST00000572579 OR1S1Q8NH92 325 aa13.04□□□□□ -0.32
CHD3-214ENST00000572579 XCL2Q9UBD3 114 aa13.04□□□□□ -0.32
CHD3-214ENST00000572579 PRSS46E5RG02 174 aa13.03□□□□□ -0.32
CHD3-214ENST00000572579 IAPPP10997 89 aa13.03□□□□□ -0.32
CHD3-214ENST00000572579 EIF2B2P49770 351 aaKnown RBP13.03□□□□□ -0.32
CHD3-214ENST00000572579 OR2F1Q13607 317 aa13.03□□□□□ -0.32
CHD3-214ENST00000572579 C12orf74Q32Q52 190 aa13.03□□□□□ -0.32
CHD3-214ENST00000572579 PYDC2Q56P42 97 aa13.03□□□□□ -0.32
CHD3-214ENST00000572579 TMEM128Q5BJH2 165 aa13.03□□□□□ -0.32
CHD3-214ENST00000572579 TMEM182Q6ZP80 229 aaPredicted RBP13.03□□□□□ -0.32
CHD3-214ENST00000572579 ZNF767PQ75MW2 155 aa13.03□□□□□ -0.32
CHD3-214ENST00000572579 PBDC1Q9BVG4 233 aa13.03□□□□□ -0.32
CHD3-214ENST00000572579 ZFP92A6NM28 416 aa13.02□□□□□ -0.33
CHD3-214ENST00000572579 ATP5IP56385 69 aaPredicted RBP13.02□□□□□ -0.33
CHD3-214ENST00000572579 SRPXP78539 464 aa13.02□□□□□ -0.33
CHD3-214ENST00000572579 PPP1R1AQ13522 171 aa13.02□□□□□ -0.33
CHD3-214ENST00000572579 CCDC190Q86UF4 302 aa13.02□□□□□ -0.33
CHD3-214ENST00000572579 SFT2D2O95562 160 aa13.01□□□□□ -0.33
CHD3-214ENST00000572579 ANXA3P12429 323 aa13.01□□□□□ -0.33
CHD3-214ENST00000572579 HLA-DRB4P13762 266 aa13.01□□□□□ -0.33
CHD3-214ENST00000572579 NKX2-1P43699 371 aaPredicted RBP13.01□□□□□ -0.33
CHD3-214ENST00000572579 SNRPD3P62318 126 aaKnown RBP13.01□□□□□ -0.33
CHD3-214ENST00000572579 OR8G2PQ6IF36 304 aa13.01□□□□□ -0.33
CHD3-214ENST00000572579 TOMM5Q8N4H5 51 aa13.01□□□□□ -0.33
CHD3-214ENST00000572579 MAGT1Q9H0U3 335 aa13.01□□□□□ -0.33
CHD3-214ENST00000572579 RBM38Q9H0Z9 239 aaKnown RBP13.01□□□□□ -0.33
CHD3-214ENST00000572579 HLA-DRB4X5D2U9 266 aa13.01□□□□□ -0.33
CHD3-214ENST00000572579 DUXBA0A1W2PPF3 345 aa13□□□□□ -0.33
CHD3-214ENST00000572579 C11orf94C9JXX5 98 aa13□□□□□ -0.33
CHD3-214ENST00000572579 SLC25A6P12236 298 aa13□□□□□ -0.33
CHD3-214ENST00000572579 FXYD7P58549 80 aa13□□□□□ -0.33
CHD3-214ENST00000572579 ZNF705AQ6ZN79 300 aaPredicted RBP13□□□□□ -0.33
CHD3-214ENST00000572579 ZNF709Q8N972 641 aa13□□□□□ -0.33
CHD3-214ENST00000572579 THAP8Q8NA92 274 aa13□□□□□ -0.33
CHD3-214ENST00000572579 C20orf173Q96LM9 149 aa13□□□□□ -0.33
CHD3-214ENST00000572579 TRGV9Q99603 122 aa13□□□□□ -0.33
CHD3-214ENST00000572579 KIAA1109Q2LD37 5005 aa13□□□□□ -0.33
CHD3-214ENST00000572579 IGKV3-20P01619 116 aa12.99□□□□□ -0.33
CHD3-214ENST00000572579 VAMP1P23763 118 aa12.99□□□□□ -0.33
CHD3-214ENST00000572579 LYZP61626 148 aa12.99□□□□□ -0.33
CHD3-214ENST00000572579 SLC35E1Q96K37 410 aa12.99□□□□□ -0.33
CHD3-214ENST00000572579 LINC00052Q96N35 136 aa12.99□□□□□ -0.33
CHD3-214ENST00000572579 SAV1Q9H4B6 383 aaPredicted RBP12.99□□□□□ -0.33
CHD3-214ENST00000572579 ZNF705FA8MVS1 300 aaPredicted RBP12.98□□□□□ -0.33
CHD3-214ENST00000572579 SNRPGP15A8MWD9 76 aa12.98□□□□□ -0.33
CHD3-214ENST00000572579 F6UB75 175 aa12.98□□□□□ -0.33
CHD3-214ENST00000572579 NOL3O60936 208 aaKnown RBP12.98□□□□□ -0.33
CHD3-214ENST00000572579 HOXB5P09067 269 aa12.98□□□□□ -0.33
CHD3-214ENST00000572579 ZNF705DP0CH99 300 aaPredicted RBP12.98□□□□□ -0.33
CHD3-214ENST00000572579 ZNF705BP0CI00 300 aaPredicted RBP12.98□□□□□ -0.33
CHD3-214ENST00000572579 GATA2P23769 480 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms