RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CDK2P24941 298 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 NFYBP25208 207 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 TSPOP30536 169 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 BRS3P32247 399 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 TAF9Q16594 264 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 PIGYQ3MUY2 71 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 TRPT1Q86TN4 253 aaKnown RBP4.62□□□□□ -1.67
VPS53-212ENST00000572259 COMMD7Q86VX2 200 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 SUMF2Q8NBJ7 301 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 OR11H6Q8NGC7 330 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 TMEM203Q969S6 136 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 RNF126Q9BV68 326 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 TMEM133Q9H2Q1 129 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 ZNRD1Q9P1U0 126 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 VPREB3Q9UKI3 123 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 AMMECR1Q9Y4X0 333 aaPredicted RBP4.62□□□□□ -1.67
VPS53-212ENST00000572259 WNK1Q9H4A3 2382 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 IGHV3OR16-13A0A075B7E8 117 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 IGHV2-26A0A0B4J1V2 119 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 OOSP1A8MZH6 123 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 H3BUX3 64 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 AIPO00170 330 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 PIN1P1O15428 100 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 ORC5O43913 435 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 MYCNOSP40205 109 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 MAP2K4P45985 399 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 CYCSP99999 105 aaKnown RBP4.61□□□□□ -1.67
VPS53-212ENST00000572259 EMX1Q04741 257 aaPredicted RBP4.61□□□□□ -1.67
VPS53-212ENST00000572259 CD300CQ08708 224 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 C1orf100Q5SVJ3 147 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 LAMTOR1Q6IAA8 161 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 BAIAP2L2Q6UXY1 529 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 C11orf42Q8N5U0 333 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 OR9G1Q8NH87 305 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 SGMS2Q8NHU3 365 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 ARL11Q969Q4 196 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 FAM210BQ96KR6 192 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 FAM19A4Q96LR4 140 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 C1orf147Q96MC9 270 aaPredicted RBP4.61□□□□□ -1.67
VPS53-212ENST00000572259 SIGMAR1Q99720 223 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 FAAP24Q9BTP7 215 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 BANF2Q9H503 90 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 IDI2-AS1Q9NZ38 188 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 DPM3Q9P2X0 92 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 TRAPPC2LQ9UL33 140 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 SSR3Q9UNL2 185 aa4.61□□□□□ -1.67
VPS53-212ENST00000572259 SOX21Q9Y651 276 aaPredicted RBP4.61□□□□□ -1.67
VPS53-212ENST00000572259 TRAV1-2A0A0B4J238 106 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 IGHV3OR16-9A0A0B4J2B5 98 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 IGKV1D-13A0A0B4J2D9 117 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 A0A0G2JRQ6 117 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 TRDV1A0A1B0GX56 115 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 CLPSL1A2RUU4 121 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 ODF3BA8MYP8 253 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 PPP5D1E7EU14 171 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 SLC22A1O15245 554 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 PDCD6O75340 191 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 LINC00614P0C842 121 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 IGKV1-13P0DP09 117 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 GNB3P16520 340 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 IL3RAP26951 378 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 CD34P28906 385 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 DYNLT3P51808 116 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 RPS25P62851 125 aaKnown RBP4.6□□□□□ -1.67
VPS53-212ENST00000572259 FABP5Q01469 135 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 PRB3Q04118 309 aaPredicted RBP4.6□□□□□ -1.67
VPS53-212ENST00000572259 C17orf58Q2M2W7 97 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 C1orf195Q5TG92 126 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 RSBN1Q5VWQ0 802 aaPredicted RBP4.6□□□□□ -1.67
VPS53-212ENST00000572259 HCP5Q6MZN7 132 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 ZNF773Q6PK81 442 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 ZNF497Q6ZNH5 498 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 TMEM91Q6ZNR0 172 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 STPG4Q8N801 248 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 FBXL15Q9H469 300 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 LINC00574Q9H8X3 128 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 BIN3Q9NQY0 253 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 NDUFB11Q9NX14 153 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 ABRACLQ9P1F3 81 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 XCL2Q9UBD3 114 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 VAX2Q9UIW0 290 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 HILPDAQ9Y5L2 63 aa4.6□□□□□ -1.67
VPS53-212ENST00000572259 A0A087WXM4 84 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 BUB1B-PAK6H3BSN5 160 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 SDCBPO00560 298 aaPredicted RBP4.59□□□□□ -1.67
VPS53-212ENST00000572259 AGPAT2O15120 278 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 IFNA1P01562 189 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 PPBPP02775 128 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 CGB3P0DN86 165 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 CGB7P0DN87 165 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 RAB3BP20337 219 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 VDAC1P21796 283 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 OMGP23515 440 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 GADD45AP24522 165 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 BLVRBP30043 206 aaPredicted RBP4.59□□□□□ -1.67
VPS53-212ENST00000572259 SELENOTP62341 195 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 SMAGPQ0VAQ4 97 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 INSL4Q14641 139 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 LY6EQ16553 131 aa4.59□□□□□ -1.67
VPS53-212ENST00000572259 LTC4SQ16873 150 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms