RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 NDUFB3O43676 98 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 WT1-ASQ06250 92 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 MPV17L2Q567V2 206 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 GOLT1AQ6ZVE7 132 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 PERPQ96FX8 193 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 IGLV2-8P01709 118 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 CHRDL1Q9BU40 450 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 MRPL32Q9BYC8 188 aaKnown RBP11.74□□□□□ -0.53
VPS35-210ENST00000568784 MRPL36Q9P0J6 103 aaKnown RBP11.74□□□□□ -0.53
VPS35-210ENST00000568784 A8MWL6 223 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 HBBP68871 147 aa11.74□□□□□ -0.53
VPS35-210ENST00000568784 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.74□□□□□ -0.53
VPS35-210ENST00000568784 TLN1Q9Y490 2541 aaKnown RBP11.73□□□□□ -0.53
VPS35-210ENST00000568784 SMIM27A0A1W2PRY6 76 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 LINC00614P0C842 121 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 TNFRSF1AP19438 455 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 OR4C13Q8NGP0 309 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 ZNF329Q86UD4 541 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 EPDR1Q9UM22 224 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 TNRC6BQ9UPQ9 1833 aaKnown RBP11.73□□□□□ -0.53
VPS35-210ENST00000568784 SFTPCP11686 197 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 UQCRFS1P47985 274 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 GDF5OSQ5U4N7 250 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 C19orf24Q9BVV8 132 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 ZNF257Q9Y2Q1 563 aa11.73□□□□□ -0.53
VPS35-210ENST00000568784 CCL25O15444 150 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 CIARTQ8N365 385 aaPredicted RBP11.72□□□□□ -0.53
VPS35-210ENST00000568784 VSTM2AQ8TAG5 236 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 OSR1Q8TAX0 266 aaPredicted RBP11.72□□□□□ -0.53
VPS35-210ENST00000568784 FAM222BQ8WU58 562 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 IGLV1-44P01699 117 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 LRRC10Q5BKY1 277 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 SLC25A48Q6ZT89 311 aaKnown RBP11.72□□□□□ -0.53
VPS35-210ENST00000568784 OR8A1Q8NGG7 326 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 PRSS3P2Q8NHM4 247 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 AP1S3Q96PC3 154 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 CEP295Q9C0D2 2601 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 TCRBV4S1A1TA0A5B7 111 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 ESDP10768 282 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 TIMM23BQ5SRD1 257 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 EXOC3-AS1Q8N2X6 119 aa11.72□□□□□ -0.53
VPS35-210ENST00000568784 IGHG3P01860 377 aa11.71□□□□□ -0.53
VPS35-210ENST00000568784 ZNF883P0CG24 379 aa11.71□□□□□ -0.53
VPS35-210ENST00000568784 SRSF12Q8WXF0 261 aaKnown RBP11.71□□□□□ -0.53
VPS35-210ENST00000568784 FAM167A-AS1Q96KT0 104 aa11.71□□□□□ -0.53
VPS35-210ENST00000568784 TMEM191AQ9H0A3 160 aa11.71□□□□□ -0.53
VPS35-210ENST00000568784 FXYD7P58549 80 aa11.71□□□□□ -0.53
VPS35-210ENST00000568784 PATE2Q6UY27 113 aa11.71□□□□□ -0.53
VPS35-210ENST00000568784 GPR82Q96P67 336 aa11.71□□□□□ -0.53
VPS35-210ENST00000568784 ALKBH7Q9BT30 221 aaPredicted RBP11.71□□□□□ -0.53
VPS35-210ENST00000568784 RPP21Q9H633 154 aaKnown RBP11.71□□□□□ -0.53
VPS35-210ENST00000568784 H0YJW9 148 aa11.71□□□□□ -0.54
VPS35-210ENST00000568784 S100A7P31151 101 aa11.71□□□□□ -0.54
VPS35-210ENST00000568784 RNASE8Q8TDE3 154 aaKnown RBP11.71□□□□□ -0.54
VPS35-210ENST00000568784 CACNG8Q8WXS5 425 aa11.71□□□□□ -0.54
VPS35-210ENST00000568784 IGF2BP2-AS1Q96M15 143 aa11.71□□□□□ -0.54
VPS35-210ENST00000568784 PPIAL4EA0A075B759 164 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 PPIAL4DF5H284 164 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 PPIAL4FP0DN26 164 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 RPL27AP46776 148 aaKnown RBP11.7□□□□□ -0.54
VPS35-210ENST00000568784 Q8N976 141 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 Q9H3A6 140 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 CD40P25942 277 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 TMEM108Q6UXF1 575 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 FA2HQ7L5A8 372 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 GUCD1Q96NT3 240 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 DKK4Q9UBT3 224 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 NDUFB8O95169 186 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 GAGE1Q13065 139 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 LYPD2Q6UXB3 125 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 ZNF788Q6ZQV5 615 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 C22orf34Q6ZV56 151 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 MAP1LC3CQ9BXW4 147 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 TMEM265A0A087WTH1 108 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 M0R296 226 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 SLC25A34Q6PIV7 304 aa11.7□□□□□ -0.54
VPS35-210ENST00000568784 CNTFRP26992 372 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 HES1Q14469 280 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 AARDQ4LEZ3 155 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 FBLN7Q53RD9 439 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 TMEM200BQ69YZ2 307 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 ZC2HC1AQ96GY0 325 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 LOXL4Q96JB6 756 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 NAA38Q9BRA0 125 aaKnown RBP11.69□□□□□ -0.54
VPS35-210ENST00000568784 NDUFA4L2Q9NRX3 87 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 DMXL2Q8TDJ6 3036 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 A0A1W2PPI3 338 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 RITA1Q96K30 269 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 LINC00312Q9Y6C7 94 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.69□□□□□ -0.54
VPS35-210ENST00000568784 TMEM116Q8NCL8 245 aa11.69□□□□□ -0.54
VPS35-210ENST00000568784 ANKHD1Q8IWZ3 2542 aaKnown RBP11.68□□□□□ -0.54
VPS35-210ENST00000568784 A0A087X0K7 114 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 CTRLP40313 264 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 WFDC3Q8IUB2 231 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 FBXL15Q9H469 300 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 INSIG2Q9Y5U4 225 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 LYNX1G3V0Z9 82 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 OR5AL1P0C617 328 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 FTH1P19P0C7X4 201 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms