RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 CIB4A0PJX0 185 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 TMEM189A5PLL7 270 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 SRRM5B3KS81 715 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 E7EQ34 232 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 G3V2T6 193 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 H7C1C5 153 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 UBFD1O14562 309 aaKnown RBP2.08□□□□□ -2.08
VPS35-209ENST00000568642 OR7C2O60412 319 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 GADD45GO95257 159 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 CXorf1O96002 111 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 OPN1SWP03999 348 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 UBBP0CG47 229 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 RPS4Y1P22090 263 aaKnown RBP2.08□□□□□ -2.08
VPS35-209ENST00000568642 COX7A1P24310 79 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 FKBP2P26885 142 aaKnown RBP2.08□□□□□ -2.08
VPS35-209ENST00000568642 IMPA1P29218 277 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 GABRA2P47869 451 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 INPP1P49441 399 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 PSMB2P49721 201 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 THBS3P49746 956 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 WNT4P56705 351 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 UBE2NP61088 152 aaKnown RBP2.08□□□□□ -2.08
VPS35-209ENST00000568642 LCN6P62502 163 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 FCN2Q15485 313 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 WHAMMP3Q1A5X7 153 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 TNFAIP8L3Q5GJ75 292 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 EBLN2Q6P2I7 272 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 FA2HQ7L5A8 372 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 LINC00596Q86U02 117 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 LRP11Q86VZ4 500 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 CEND1Q8N111 149 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 LYG1Q8N1E2 194 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 KRTCAP2Q8N6L1 136 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 OR4K5Q8NGD3 323 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 OR51H1Q8NH63 302 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 OR5W2Q8NH69 310 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 MUC7Q8TAX7 377 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 DCANP1Q8TF63 244 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 OR5M11Q96RB7 305 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 PEBP4Q96S96 227 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 CCL19Q99731 98 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 B9D2Q9BPU9 175 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 CHCHD5Q9BSY4 110 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 SLC25A2Q9BXI2 301 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 REG4Q9BYZ8 158 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 ULBP3Q9BZM4 244 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 LINC00470Q9BZP3 86 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 TMEM126AQ9H061 195 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 CDC42EP4Q9H3Q1 356 aaKnown RBP2.08□□□□□ -2.08
VPS35-209ENST00000568642 NOX3Q9HBY0 568 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 GPR84Q9NQS5 396 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 COPZ2Q9P299 210 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 CRCT1Q9UGL9 99 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 ZNF230Q9UIE0 474 aaPredicted RBP2.08□□□□□ -2.08
VPS35-209ENST00000568642 RPUSD1Q9UJJ7 312 aaKnown RBP2.08□□□□□ -2.08
VPS35-209ENST00000568642 HS3ST2Q9Y278 367 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 MED31Q9Y3C7 131 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 HEBP2Q9Y5Z4 205 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 ENPP4Q9Y6X5 453 aa2.08□□□□□ -2.08
VPS35-209ENST00000568642 OBSCNQ5VST9 7968 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 ARHGAP21Q5T5U3 1957 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 TRBV19A0A075B6N1 114 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 BORCS7-ASMTA0A0B4J1R7 106 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 A0A0J9YXY3 114 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 DUXBA0A1W2PPF3 345 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 TMEM72A0PK05 275 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 C9JAW5 83 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 C9JQL5 133 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 F5H5P2 479 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 J3QQQ9 107 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 TP53I11O14683 189 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 TRAF3IP2O43734 574 aaPredicted RBP2.07□□□□□ -2.08
VPS35-209ENST00000568642 STATHP02808 62 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 GYPCP04921 128 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 C8GP07360 202 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 SOD3P08294 240 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 SCTP09683 121 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 P0DMU3 169 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 FAM231AP0DMU4 169 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 FAM231CP0DMU5 169 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 OR12D1P0DN82 309 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 PGAM2P15259 253 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 HMGA1P17096 107 aaKnown RBP2.07□□□□□ -2.08
VPS35-209ENST00000568642 OR10J1P30954 320 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 OPRM1P35372 400 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 CDKN2AP42771 156 aaKnown RBP2.07□□□□□ -2.08
VPS35-209ENST00000568642 LPAR6P43657 344 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 RBP2P50120 134 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 INSL3P51460 131 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 ZNF140P52738 457 aaPredicted RBP2.07□□□□□ -2.08
VPS35-209ENST00000568642 HERVK_113P61574 105 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 PPP1CAP62136 330 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 PSG7Q13046 419 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 ZNF141Q15928 474 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 DNLZQ5SXM8 178 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 RNF165Q6ZSG1 346 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 ADM2Q7Z4H4 148 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 WDR86Q86TI4 376 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 Q8N377 158 aa2.07□□□□□ -2.08
VPS35-209ENST00000568642 SLC22A24Q8N4F4 322 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms