RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 TMED4Q7Z7H5 227 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 RBPMSQ93062 196 aaKnown RBP10.79□□□□□ -0.68
CLN3-236ENST00000568558 HEYLQ9NQ87 328 aaPredicted RBP10.79□□□□□ -0.68
CLN3-236ENST00000568558 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.79□□□□□ -0.68
CLN3-236ENST00000568558 CLEC5AQ9NY25 188 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 TBC1D24Q9ULP9 559 aa10.79□□□□□ -0.68
CLN3-236ENST00000568558 DYNC1H1Q14204 4646 aaKnown RBP10.78□□□□□ -0.68
CLN3-236ENST00000568558 IGHV4-4A0A075B6R2 117 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 HNRNPCP07910 306 aaKnown RBP eCLIP10.78□□□□□ -0.68
CLN3-236ENST00000568558 SLC25A4P12235 298 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 AP2S1P53680 142 aaPredicted RBP10.78□□□□□ -0.68
CLN3-236ENST00000568558 YPEL3P61236 119 aaPredicted RBP10.78□□□□□ -0.68
CLN3-236ENST00000568558 DHODHQ02127 395 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 USF2Q15853 346 aaPredicted RBP10.78□□□□□ -0.68
CLN3-236ENST00000568558 PSMG4Q5JS54 123 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 TRIQKQ629K1 86 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 RNASEH2CQ8TDP1 164 aaKnown RBP10.78□□□□□ -0.68
CLN3-236ENST00000568558 Q8WTZ3 238 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 GPR146Q96CH1 333 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 SCGB3A2Q96PL1 93 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 RAB40CQ96S21 281 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 CACNG5Q9UF02 275 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 TMEM56-RWDD3S4R434 201 aa10.78□□□□□ -0.68
CLN3-236ENST00000568558 DNAH11Q96DT5 4516 aa10.77□□□□□ -0.68
CLN3-236ENST00000568558 IL7P13232 177 aa10.77□□□□□ -0.69
CLN3-236ENST00000568558 OR10J1P30954 320 aa10.77□□□□□ -0.69
CLN3-236ENST00000568558 BTCP35070 178 aa10.77□□□□□ -0.69
CLN3-236ENST00000568558 SLC24A4Q8NFF2 622 aa10.77□□□□□ -0.69
CLN3-236ENST00000568558 TMEM170AQ8WVE7 144 aa10.77□□□□□ -0.69
CLN3-236ENST00000568558 DEDD2Q8WXF8 326 aa10.77□□□□□ -0.69
CLN3-236ENST00000568558 CELA1Q9UNI1 258 aa10.77□□□□□ -0.69
CLN3-236ENST00000568558 PKHD1P08F94 4074 aa10.76□□□□□ -0.69
CLN3-236ENST00000568558 PKD1P98161 4303 aa10.76□□□□□ -0.69
CLN3-236ENST00000568558 FAM90A26D6RGX4 464 aa10.76□□□□□ -0.69
CLN3-236ENST00000568558 IL4P05112 153 aa10.76□□□□□ -0.69
CLN3-236ENST00000568558 INPP1P49441 399 aa10.76□□□□□ -0.69
CLN3-236ENST00000568558 LYZL2Q7Z4W2 148 aa10.76□□□□□ -0.69
CLN3-236ENST00000568558 CENPSQ8N2Z9 138 aa10.76□□□□□ -0.69
CLN3-236ENST00000568558 SLC25A21Q9BQT8 299 aaPredicted RBP10.76□□□□□ -0.69
CLN3-236ENST00000568558 RNF126Q9BV68 326 aa10.76□□□□□ -0.69
CLN3-236ENST00000568558 KCNIP3Q9Y2W7 256 aa10.76□□□□□ -0.69
CLN3-236ENST00000568558 CEBPZOSA8MTT3 80 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 BUB3O43684 328 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 NXPH3O95157 252 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 AMBPP02760 352 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 SNRPD3P62318 126 aaKnown RBP10.75□□□□□ -0.69
CLN3-236ENST00000568558 PPP1R1AQ13522 171 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 C12orf74Q32Q52 190 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 NMSQ5H8A3 153 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 IL22RA2Q969J5 263 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 C1QTNF4Q9BXJ3 329 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 SEPSECSQ9HD40 501 aaKnown RBP10.75□□□□□ -0.69
CLN3-236ENST00000568558 NRN1Q9NPD7 142 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 FLVCR2Q9UPI3 526 aa10.75□□□□□ -0.69
CLN3-236ENST00000568558 PLA2G10O15496 165 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 TOMM40O96008 361 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 VAMP1P23763 118 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 NPY1RP25929 384 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 NUTF2P61970 127 aaKnown RBP10.74□□□□□ -0.69
CLN3-236ENST00000568558 TMEM128Q5BJH2 165 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 ETFRF1Q6IPR1 90 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 SIGLEC15Q6ZMC9 328 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 ZNF767PQ75MW2 155 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 NPIPB3Q92617 1050 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 ACY3Q96HD9 319 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 XCL2Q9UBD3 114 aa10.74□□□□□ -0.69
CLN3-236ENST00000568558 DEFB131BA0A096LNP1 70 aa10.73□□□□□ -0.69
CLN3-236ENST00000568558 A0A0B4J2A0 478 aa10.73□□□□□ -0.69
CLN3-236ENST00000568558 NAP1L6A6NFF2 107 aa10.73□□□□□ -0.69
CLN3-236ENST00000568558 H3BMM0 161 aa10.73□□□□□ -0.69
CLN3-236ENST00000568558 NDUFB6O95139 128 aa10.73□□□□□ -0.69
CLN3-236ENST00000568558 NOXA1Q86UR1 476 aa10.73□□□□□ -0.69
CLN3-236ENST00000568558 LGI3Q8N145 548 aa10.73□□□□□ -0.69
CLN3-236ENST00000568558 SHPKQ9UHJ6 478 aa10.73□□□□□ -0.69
CLN3-236ENST00000568558 SFT2D2O95562 160 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 RD3LP0DJH9 198 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 SULT1A3P0DMM9 295 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 SULT1A4P0DMN0 295 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 PSG1P11464 419 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 ANXA3P12429 323 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 HLA-DRB4P13762 266 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 LINC00336Q6ZUF6 198 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 OR51G1Q8NGK1 321 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 SCRT1Q9BWW7 348 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 CACFD1Q9UGQ2 172 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 HLA-DRB4X5D2U9 266 aa10.72□□□□□ -0.69
CLN3-236ENST00000568558 NKX2-1P43699 371 aaPredicted RBP10.71□□□□□ -0.69
CLN3-236ENST00000568558 SRPXP78539 464 aa10.71□□□□□ -0.69
CLN3-236ENST00000568558 RNF125Q96EQ8 232 aa10.71□□□□□ -0.69
CLN3-236ENST00000568558 IFNA10P01566 189 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 P0DMU3 169 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 FAM231AP0DMU4 169 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 FAM231CP0DMU5 169 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 ANXA7P20073 488 aaKnown RBP10.7□□□□□ -0.7
CLN3-236ENST00000568558 SMCO1Q147U7 214 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 GDF5OSQ5U4N7 250 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 ZNF705AQ6ZN79 300 aaPredicted RBP10.7□□□□□ -0.7
CLN3-236ENST00000568558 POM121L12Q8N7R1 296 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 LRTM2Q8N967 370 aa10.7□□□□□ -0.7
CLN3-236ENST00000568558 DTD1Q8TEA8 209 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms