RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 SCGB2A1O75556 95 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 OR2C1O95371 312 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 ZP3P21754 424 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 HOXD3P31249 432 aaPredicted RBP6.48□□□□□ -1.37
SF3B3-212ENST00000568539 MYCNOSP40205 109 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 YPEL3P61236 119 aaPredicted RBP6.48□□□□□ -1.37
SF3B3-212ENST00000568539 ZNF90Q03938 601 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 RELQ04864 619 aaPredicted RBP6.48□□□□□ -1.37
SF3B3-212ENST00000568539 LGALSLQ3ZCW2 172 aaPredicted RBP6.48□□□□□ -1.37
SF3B3-212ENST00000568539 BTNL8Q6UX41 500 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 GPHB5Q86YW7 130 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 C9orf62Q8N4C0 152 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 DPF1Q92782 380 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 TRGV9Q99603 122 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 MGST2Q99735 147 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 PARD6GQ9BYG4 376 aaPredicted RBP6.48□□□□□ -1.37
SF3B3-212ENST00000568539 WDR61Q9GZS3 305 aaKnown RBP6.48□□□□□ -1.37
SF3B3-212ENST00000568539 TENM1Q9UKZ4 2725 aa6.48□□□□□ -1.37
SF3B3-212ENST00000568539 IGHV3-35A0A0C4DH35 117 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 TAAR5O14804 337 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 AGPAT2O15120 278 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 BCL2L11O43521 198 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 MPDU1O75352 247 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 TOMM40O96008 361 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 IFNA5P01569 189 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 FABP1P07148 127 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 RD3LP0DJH9 198 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 PSG1P11464 419 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 FGF7P21781 194 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 SLURP1P55000 103 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 KLF5Q13887 457 aaPredicted RBP6.47□□□□□ -1.37
SF3B3-212ENST00000568539 ZNF266Q14584 549 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 RPEL1Q2QD12 228 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 LAMTOR1Q6IAA8 161 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 ZNF600Q6ZNG1 722 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 TMEM182Q6ZP80 229 aaPredicted RBP6.47□□□□□ -1.37
SF3B3-212ENST00000568539 CYP2G1PQ6ZSU1 146 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 TMUB2Q71RG4 321 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 OR4F17Q8NGA8 305 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 DLX4Q92988 240 aaPredicted RBP6.47□□□□□ -1.37
SF3B3-212ENST00000568539 RCC1LQ96I51 464 aaKnown RBP6.47□□□□□ -1.37
SF3B3-212ENST00000568539 OR4F4Q96R69 305 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 ARPC5LQ9BPX5 153 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 GGTLC1Q9BX51 225 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 NPCDR1Q9BY65 106 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 ARL6Q9H0F7 186 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 CYTL1Q9NRR1 136 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 SLC45A2Q9UMX9 530 aa6.47□□□□□ -1.37
SF3B3-212ENST00000568539 BORCS7-ASMTA0A0B4J1R7 106 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 BOLA2-SMG1P6H3BVE0 249 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 M0QZ24 198 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 LGALS9O00182 355 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 NDUFA4O00483 81 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 TSPAN15O95858 294 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 CAMLGP49069 296 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 NKX2-5P52952 324 aaPredicted RBP6.46□□□□□ -1.38
SF3B3-212ENST00000568539 SYNJ2BPP57105 145 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 SELENOTP62341 195 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 RAB31Q13636 194 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 OPCMLQ14982 345 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 FAM106AQ4KMX7 169 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 RPL7L1Q6DKI1 246 aaKnown RBP6.46□□□□□ -1.38
SF3B3-212ENST00000568539 TOMM20LQ6UXN7 152 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 UNQ9165/PRO28630Q6UXU0 137 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 NBEAL2Q6ZNJ1 2754 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 C1QL4Q86Z23 238 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 LINC00482Q8N8I6 264 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 SCGB1C1Q8TD33 95 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 Q8WTZ3 238 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 TMEM190Q8WZ59 177 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 PUS1Q9Y606 427 aaKnown RBP eCLIP6.46□□□□□ -1.38
SF3B3-212ENST00000568539 TNCP24821 2201 aa6.46□□□□□ -1.38
SF3B3-212ENST00000568539 KMT2CQ8NEZ4 4911 aaKnown RBP6.45□□□□□ -1.38
SF3B3-212ENST00000568539 KANTRA0A1W2PQU2 76 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 WI2-2373I1.2A0A1W2PRP0 233 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 ZNF320A2RRD8 509 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 A8MWP6 167 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 PLXNB1O43157 2135 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 JTBO76095 146 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 YIF1AO95070 293 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 LINC00869P0C866 280 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 GATA2P23769 480 aaPredicted RBP6.45□□□□□ -1.38
SF3B3-212ENST00000568539 RPL29P47914 159 aaKnown RBP6.45□□□□□ -1.38
SF3B3-212ENST00000568539 BPIFCQ8NFQ6 507 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 OR51G1Q8NGK1 321 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 RSG1Q9BU20 258 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 ARV1Q9H2C2 271 aa6.45□□□□□ -1.38
SF3B3-212ENST00000568539 IGHV3OR16-8A0A075B7F1 116 aa6.44□□□□□ -1.38
SF3B3-212ENST00000568539 C17orf112F2Z3M2 114 aa6.44□□□□□ -1.38
SF3B3-212ENST00000568539 K7EMT4 169 aa6.44□□□□□ -1.38
SF3B3-212ENST00000568539 OVOL1O14753 267 aa6.44□□□□□ -1.38
SF3B3-212ENST00000568539 CFDP00746 253 aaPredicted RBP6.44□□□□□ -1.38
SF3B3-212ENST00000568539 IL4P05112 153 aa6.44□□□□□ -1.38
SF3B3-212ENST00000568539 HNRNPCP07910 306 aaKnown RBP eCLIP6.44□□□□□ -1.38
SF3B3-212ENST00000568539 ATP6V0CP27449 155 aa6.44□□□□□ -1.38
SF3B3-212ENST00000568539 PLP1P60201 277 aa6.44□□□□□ -1.38
SF3B3-212ENST00000568539 USF2Q15853 346 aaPredicted RBP6.44□□□□□ -1.38
SF3B3-212ENST00000568539 MIC13Q5XKP0 118 aa6.44□□□□□ -1.38
SF3B3-212ENST00000568539 STPG3Q8N7X2 389 aa6.44□□□□□ -1.38
SF3B3-212ENST00000568539 ZNF709Q8N972 641 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms