RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TBC1D24Q9ULP9 559 aa11.12□□□□□ -0.63
VPS39-210ENST00000568357 H3BP45 60 aa11.11□□□□□ -0.63
VPS39-210ENST00000568357 DNASE2O00115 360 aaPredicted RBP11.11□□□□□ -0.63
VPS39-210ENST00000568357 HNRNPCP07910 306 aaKnown RBP eCLIP11.11□□□□□ -0.63
VPS39-210ENST00000568357 RPL35AP18077 110 aaKnown RBP11.11□□□□□ -0.63
VPS39-210ENST00000568357 NKX2-1P43699 371 aaPredicted RBP11.11□□□□□ -0.63
VPS39-210ENST00000568357 CMC4P56277 68 aaPredicted RBP11.11□□□□□ -0.63
VPS39-210ENST00000568357 RPP30P78346 268 aaKnown RBP11.11□□□□□ -0.63
VPS39-210ENST00000568357 C16orf54Q6UWD8 224 aa11.11□□□□□ -0.63
VPS39-210ENST00000568357 OR51G1Q8NGK1 321 aa11.11□□□□□ -0.63
VPS39-210ENST00000568357 SLC35E1Q96K37 410 aa11.11□□□□□ -0.63
VPS39-210ENST00000568357 OVOL2Q9BRP0 275 aa11.11□□□□□ -0.63
VPS39-210ENST00000568357 MAP6D1Q9H9H5 199 aa11.11□□□□□ -0.63
VPS39-210ENST00000568357 NUDT15Q9NV35 164 aa11.11□□□□□ -0.63
VPS39-210ENST00000568357 IGKV1OR2-108A0A075B7D4 117 aa11.1□□□□□ -0.63
VPS39-210ENST00000568357 TRAV2A0A0B4J234 112 aa11.1□□□□□ -0.63
VPS39-210ENST00000568357 ZFP92A6NM28 416 aa11.1□□□□□ -0.63
VPS39-210ENST00000568357 PAX9P55771 341 aa11.1□□□□□ -0.63
VPS39-210ENST00000568357 IAH1Q2TAA2 248 aaPredicted RBP11.1□□□□□ -0.63
VPS39-210ENST00000568357 GRAMD2BQ96HH9 432 aa11.1□□□□□ -0.63
VPS39-210ENST00000568357 NARS2Q96I59 477 aaKnown RBP11.1□□□□□ -0.63
VPS39-210ENST00000568357 RABAC1Q9UI14 185 aa11.1□□□□□ -0.63
VPS39-210ENST00000568357 BUB3O43684 328 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 SSSCA1O60232 199 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 H2AFB2P0C5Z0 115 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 APOC4P55056 127 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 IFITM3Q01628 133 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 STXBP6Q8NFX7 210 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 GLMPQ8WWB7 406 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 RNF125Q96EQ8 232 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 SMIM8Q96KF7 97 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 SEC22CQ9BRL7 303 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 PSENENQ9NZ42 101 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 PTTG2Q9NZH5 202 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 GSKIPQ9P0R6 139 aa11.09□□□□□ -0.63
VPS39-210ENST00000568357 STRAPQ9Y3F4 350 aaKnown RBP11.09□□□□□ -0.63
VPS39-210ENST00000568357 KIR2DL5BA0A0G2JN68 375 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 KIR2DL5BA0A0G2JPC4 375 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 FAM240BA0A1B0GVZ2 78 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 PMS2P5A8MQ11 134 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 K7EQG2 157 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 CCSO14618 274 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 LYL1P12980 280 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 DEFB131AP59861 70 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 ASAH1Q13510 395 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 OR2F1Q13607 317 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 LEMD1Q68G75 181 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 KIR2DL5AQ8N109 375 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 STPG3Q8N7X2 389 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 THAP8Q8NA92 274 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 ZBTB8BQ8NAP8 495 aaPredicted RBP11.08□□□□□ -0.64
VPS39-210ENST00000568357 KIR2DL5BQ8NHK3 375 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 ZNF431Q8TF32 576 aaPredicted RBP11.08□□□□□ -0.64
VPS39-210ENST00000568357 DCANP1Q8TF63 244 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 TRGV9Q99603 122 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 PBDC1Q9BVG4 233 aa11.08□□□□□ -0.64
VPS39-210ENST00000568357 HELTA6NFD8 242 aa11.07□□□□□ -0.64
VPS39-210ENST00000568357 SNRPGP15A8MWD9 76 aa11.07□□□□□ -0.64
VPS39-210ENST00000568357 UPK1BO75841 260 aa11.07□□□□□ -0.64
VPS39-210ENST00000568357 SCGB1D2O95969 90 aa11.07□□□□□ -0.64
VPS39-210ENST00000568357 ZNF846Q147U1 533 aa11.07□□□□□ -0.64
VPS39-210ENST00000568357 MZT2BQ6NZ67 158 aa11.07□□□□□ -0.64
VPS39-210ENST00000568357 Q6ZWC4 215 aa11.07□□□□□ -0.64
VPS39-210ENST00000568357 PCLOQ9Y6V0 5065 aa11.06□□□□□ -0.64
VPS39-210ENST00000568357 UBE2CO00762 179 aa11.06□□□□□ -0.64
VPS39-210ENST00000568357 SPRY2O43597 315 aa11.06□□□□□ -0.64
VPS39-210ENST00000568357 CCNKO75909 580 aa11.06□□□□□ -0.64
VPS39-210ENST00000568357 MBPP02686 304 aaPredicted RBP11.06□□□□□ -0.64
VPS39-210ENST00000568357 EIF2B2P49770 351 aaKnown RBP11.06□□□□□ -0.64
VPS39-210ENST00000568357 AP2S1P53680 142 aaPredicted RBP11.06□□□□□ -0.64
VPS39-210ENST00000568357 LYZP61626 148 aa11.06□□□□□ -0.64
VPS39-210ENST00000568357 DEFB135Q30KP9 77 aa11.06□□□□□ -0.64
VPS39-210ENST00000568357 ZFAND6Q6FIF0 208 aa11.06□□□□□ -0.64
VPS39-210ENST00000568357 TMEM182Q6ZP80 229 aaPredicted RBP11.06□□□□□ -0.64
VPS39-210ENST00000568357 ACOT7LQ6ZUV0 252 aa11.06□□□□□ -0.64
VPS39-210ENST00000568357 C12orf45Q8N5I9 185 aaPredicted RBP11.06□□□□□ -0.64
VPS39-210ENST00000568357 WDR12Q9GZL7 423 aaKnown RBP11.06□□□□□ -0.64
VPS39-210ENST00000568357 CSTL1Q9H114 145 aa11.06□□□□□ -0.64
VPS39-210ENST00000568357 RCL1Q9Y2P8 373 aaKnown RBP11.06□□□□□ -0.64
VPS39-210ENST00000568357 FAM25EA8MYX2 175 aa11.05□□□□□ -0.64
VPS39-210ENST00000568357 FABP1P07148 127 aa11.05□□□□□ -0.64
VPS39-210ENST00000568357 ZNF688P0C7X2 276 aa11.05□□□□□ -0.64
VPS39-210ENST00000568357 GATA2P23769 480 aaPredicted RBP11.05□□□□□ -0.64
VPS39-210ENST00000568357 OR8G2PQ6IF36 304 aa11.05□□□□□ -0.64
VPS39-210ENST00000568357 TMEM14EPQ6UXP3 125 aa11.05□□□□□ -0.64
VPS39-210ENST00000568357 RNF183Q96D59 192 aa11.05□□□□□ -0.64
VPS39-210ENST00000568357 RAB40CQ96S21 281 aa11.05□□□□□ -0.64
VPS39-210ENST00000568357 TP53TG1Q9Y2A0 90 aa11.05□□□□□ -0.64
VPS39-210ENST00000568357 C7orf66A4D0T2 115 aa11.04□□□□□ -0.64
VPS39-210ENST00000568357 METTL15P1P0C7V9 234 aa11.04□□□□□ -0.64
VPS39-210ENST00000568357 TAS2R30P59541 319 aa11.04□□□□□ -0.64
VPS39-210ENST00000568357 PLECQ15149 4684 aaKnown RBP11.04□□□□□ -0.64
VPS39-210ENST00000568357 SIGLEC15Q6ZMC9 328 aa11.04□□□□□ -0.64
VPS39-210ENST00000568357 TMEM144Q7Z5S9 345 aa11.04□□□□□ -0.64
VPS39-210ENST00000568357 BATF3Q9NR55 127 aa11.04□□□□□ -0.64
VPS39-210ENST00000568357 C5orf51A6NDU8 294 aa11.03□□□□□ -0.64
VPS39-210ENST00000568357 KNCNA6PVL3 124 aa11.03□□□□□ -0.64
VPS39-210ENST00000568357 TSC22D2O75157 780 aa11.03□□□□□ -0.64
VPS39-210ENST00000568357 IL5P05113 134 aa11.03□□□□□ -0.64
VPS39-210ENST00000568357 RRAS2P62070 204 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms