RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 OR5AC1P0C628 307 aa12.48□□□□□ -0.41
CLK3-221ENST00000568139 PSG1P11464 419 aa12.48□□□□□ -0.41
CLK3-221ENST00000568139 FOXI2Q6ZQN5 318 aa12.48□□□□□ -0.41
CLK3-221ENST00000568139 OR51G1Q8NGK1 321 aa12.48□□□□□ -0.41
CLK3-221ENST00000568139 RBPMSQ93062 196 aaKnown RBP12.48□□□□□ -0.41
CLK3-221ENST00000568139 GPR146Q96CH1 333 aa12.48□□□□□ -0.41
CLK3-221ENST00000568139 ABHD1Q96SE0 405 aa12.48□□□□□ -0.41
CLK3-221ENST00000568139 WDR12Q9GZL7 423 aaKnown RBP12.48□□□□□ -0.41
CLK3-221ENST00000568139 CACNG5Q9UF02 275 aa12.48□□□□□ -0.41
CLK3-221ENST00000568139 TEX13DA0A0J9YY54 714 aaPredicted RBP12.47□□□□□ -0.41
CLK3-221ENST00000568139 CEBPZOSA8MTT3 80 aa12.47□□□□□ -0.41
CLK3-221ENST00000568139 NCS1P62166 190 aa12.47□□□□□ -0.41
CLK3-221ENST00000568139 NOXA1Q86UR1 476 aa12.47□□□□□ -0.41
CLK3-221ENST00000568139 SELENOHQ8IZQ5 122 aaKnown RBP12.47□□□□□ -0.41
CLK3-221ENST00000568139 MARCH1Q8TCQ1 289 aa12.47□□□□□ -0.41
CLK3-221ENST00000568139 ACY3Q96HD9 319 aa12.47□□□□□ -0.41
CLK3-221ENST00000568139 SOCS3O14543 225 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 NUP62P37198 522 aaPredicted RBP12.46□□□□□ -0.41
CLK3-221ENST00000568139 ID1P41134 155 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 ZNF79Q15937 498 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 SCGB2B2Q4G0G5 96 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 NMSQ5H8A3 153 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 OR8G2PQ6IF36 304 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 C1orf158Q8N1D5 194 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 TMEM229BQ8NBD8 167 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 RNF125Q96EQ8 232 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 LINC00052Q96N35 136 aa12.46□□□□□ -0.41
CLK3-221ENST00000568139 RTBDNQ9BSG5 229 aaPredicted RBP12.46□□□□□ -0.41
CLK3-221ENST00000568139 HSPG2P98160 4391 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 FAM25AB3EWG3 89 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 FAM25CB3EWG5 89 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 FAM25GB3EWG6 89 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 HBE1P02100 147 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 HTN3P15516 51 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 PSMB3P49720 205 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 FAM3BP58499 235 aaPredicted RBP12.45□□□□□ -0.42
CLK3-221ENST00000568139 VBP1P61758 197 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 PSG9Q00887 426 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 SPATA31B1PQ5VZV4 182 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 TMEM88Q6PEY1 159 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 OR4B1Q8NGF8 309 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 SLC35B3Q9H1N7 401 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 NAA60Q9H7X0 242 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 PFDN2Q9UHV9 154 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 GOLT1BQ9Y3E0 138 aa12.45□□□□□ -0.42
CLK3-221ENST00000568139 YTHDF2Q9Y5A9 579 aaKnown RBP12.45□□□□□ -0.42
CLK3-221ENST00000568139 A0A087WXM4 84 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 LOC102723971A0A1B0GUV8 181 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 CDK2AP2O75956 126 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 RAB3DO95716 219 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 RORCP51449 518 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 PAX9P55771 341 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 TAS2R19P59542 299 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 MEF2DQ14814 521 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 MZT2AQ6P582 158 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 FUNDC2Q9BWH2 189 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 VCX3AQ9NNX9 186 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 CACFD1Q9UGQ2 172 aa12.44□□□□□ -0.42
CLK3-221ENST00000568139 C14orf166Q9Y224 244 aaKnown RBP12.44□□□□□ -0.42
CLK3-221ENST00000568139 TNFAIP8O95379 198 aa12.43□□□□□ -0.42
CLK3-221ENST00000568139 SUPT4H1P63272 117 aaKnown RBP12.43□□□□□ -0.42
CLK3-221ENST00000568139 KLF9Q13886 244 aaPredicted RBP12.43□□□□□ -0.42
CLK3-221ENST00000568139 C1orf194Q5T5A4 169 aa12.43□□□□□ -0.42
CLK3-221ENST00000568139 TMEM268Q5VZI3 342 aa12.43□□□□□ -0.42
CLK3-221ENST00000568139 STEAP1BQ6NZ63 245 aa12.43□□□□□ -0.42
CLK3-221ENST00000568139 C15orf53Q8NAA6 179 aa12.43□□□□□ -0.42
CLK3-221ENST00000568139 PBDC1Q9BVG4 233 aa12.43□□□□□ -0.42
CLK3-221ENST00000568139 EXTL2Q9UBQ6 330 aa12.43□□□□□ -0.42
CLK3-221ENST00000568139 U3KQ87 197 aa12.43□□□□□ -0.42
CLK3-221ENST00000568139 DAD1P61803 113 aa12.42□□□□□ -0.42
CLK3-221ENST00000568139 TNP2Q05952 138 aa12.42□□□□□ -0.42
CLK3-221ENST00000568139 SURF2Q15527 256 aaPredicted RBP12.42□□□□□ -0.42
CLK3-221ENST00000568139 RRN3P1Q2M238 152 aa12.42□□□□□ -0.42
CLK3-221ENST00000568139 FAM78BQ5VT40 261 aa12.42□□□□□ -0.42
CLK3-221ENST00000568139 COQ8AQ8NI60 647 aa12.42□□□□□ -0.42
CLK3-221ENST00000568139 C7orf50Q9BRJ6 194 aaKnown RBP12.42□□□□□ -0.42
CLK3-221ENST00000568139 TMED3Q9Y3Q3 217 aa12.42□□□□□ -0.42
CLK3-221ENST00000568139 TMEM56-RWDD3S4R434 201 aa12.42□□□□□ -0.42
CLK3-221ENST00000568139 IGKV1D-37A0A075B6S9 117 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 A0A0J9YX75 114 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 CRYM-AS1A6NIL9 109 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 A8MTW9 85 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 C16orf90A8MZG2 172 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 F6UB75 175 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 ISLRO14498 428 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 SULT1A3P0DMM9 295 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 SULT1A4P0DMN0 295 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 ZNF90Q03938 601 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 GPR107Q5VW38 600 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 EBLN2Q6P2I7 272 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 C15orf40Q8WUR7 153 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 GPR132Q9UNW8 380 aa12.41□□□□□ -0.42
CLK3-221ENST00000568139 ZFP92A6NM28 416 aa12.4□□□□□ -0.42
CLK3-221ENST00000568139 ALDH3B2P48448 385 aa12.4□□□□□ -0.42
CLK3-221ENST00000568139 GAMTQ14353 236 aa12.4□□□□□ -0.42
CLK3-221ENST00000568139 FAAP20Q6NZ36 180 aa12.4□□□□□ -0.42
CLK3-221ENST00000568139 GSG1LQ6UXU4 331 aa12.4□□□□□ -0.42
CLK3-221ENST00000568139 GPX4P36969 197 aaPredicted RBP12.39□□□□□ -0.43
CLK3-221ENST00000568139 SSBP1Q04837 148 aaKnown RBP12.39□□□□□ -0.43
CLK3-221ENST00000568139 AMTNQ6UX39 209 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 149.2 ms