RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 VMA21Q3ZAQ7 101 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 RNF212Q495C1 297 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 AVPI1Q5T686 147 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 C9orf47Q6ZRZ4 202 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 SLC35E3Q7Z769 313 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 PDPNQ86YL7 162 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 TGIF2LXQ8IUE1 241 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 CBLN2Q8IUK8 224 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 PRR26Q8N8Z3 221 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 SLC24A4Q8NFF2 622 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 OR8B3Q8NGG8 313 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 OR4C13Q8NGP0 309 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 OR8B2Q96RD0 313 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 NABP2Q9BQ15 211 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 MRPL20Q9BYC9 149 aaKnown RBP4.71□□□□□ -1.66
VPS39-209ENST00000568029 COMMD5Q9GZQ3 224 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 TMEM133Q9H2Q1 129 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 VSIRQ9H7M9 311 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 SIRT7Q9NRC8 400 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 PRELID1Q9Y255 219 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 WASHC3Q9Y3C0 194 aa4.71□□□□□ -1.66
VPS39-209ENST00000568029 AMMECR1Q9Y4X0 333 aaPredicted RBP4.71□□□□□ -1.66
VPS39-209ENST00000568029 YLPM1P49750 1951 aaKnown RBP4.71□□□□□ -1.66
VPS39-209ENST00000568029 PPIAL4CA0A0B4J2A2 164 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 COLCA2A8K830 154 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 C1orf196B1AJZ1 125 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 SEC14L6B5MCN3 397 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 INS-IGF2F8WCM5 200 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 TMEM250H0YL14 139 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 ENSAO43768 121 aaKnown RBP4.7□□□□□ -1.66
VPS39-209ENST00000568029 MT-CO2P00403 227 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 CA2P00918 260 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 IGHV2-70P01814 119 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 PPIAL4GP0DN37 164 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 GPX4P36969 197 aaPredicted RBP4.7□□□□□ -1.66
VPS39-209ENST00000568029 CDKN1AP38936 164 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 CDC34P49427 236 aaPredicted RBP4.7□□□□□ -1.66
VPS39-209ENST00000568029 FGF8P55075 233 aaPredicted RBP4.7□□□□□ -1.66
VPS39-209ENST00000568029 RAB5BP61020 215 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 RPL8P62917 257 aaKnown RBP4.7□□□□□ -1.66
VPS39-209ENST00000568029 C2orf83Q53S99 150 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 UTF1Q5T230 341 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 C12orf54Q6X4T0 127 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 CYB561D1Q8N8Q1 229 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 NANPQ8TBE9 248 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 TMEM167AQ8TBQ9 72 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 CACNG8Q8WXS5 425 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 TXNDC17Q9BRA2 123 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 SLC25A33Q9BSK2 321 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 CLEC7AQ9BXN2 247 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 CTSZQ9UBR2 303 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 HYDINQ4G0P3 5121 aa4.7□□□□□ -1.66
VPS39-209ENST00000568029 IGHV4-30-2A0A087WSY4 118 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 SRRM4A7MD48 611 aaKnown RBP4.69□□□□□ -1.66
VPS39-209ENST00000568029 PRSS46E5RG02 174 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 LYNX1G3V0Z9 82 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 PDE6DO43924 150 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 CXorf1O96002 111 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 IGKV1D-33P01593 117 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 IGKV1-33P01594 117 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 IGHV4-39P01824 125 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 IGKV1-16P04430 117 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 LIPFP07098 398 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 FBP1P09467 338 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 SAA1P0DJI8 122 aaPredicted RBP4.69□□□□□ -1.66
VPS39-209ENST00000568029 LYNX1P0DP58 116 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 FOLR2P14207 255 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 PAX1P15863 534 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 MAS1LP35410 378 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 AKR1C3P42330 323 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 RPL29P47914 159 aaKnown RBP4.69□□□□□ -1.66
VPS39-209ENST00000568029 REG1BP48304 166 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 RHOBP62745 196 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 MEF2BQ02080 365 aaPredicted RBP4.69□□□□□ -1.66
VPS39-209ENST00000568029 TMEM241Q24JQ0 296 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 ZNF841Q6ZN19 808 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 IQCF2Q8IXL9 164 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 NEXN-AS1Q8NBZ9 246 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 C8orf46Q8TAG6 207 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 ST6GALNAC6Q969X2 333 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 SLC35E1Q96K37 410 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 MGST2Q99735 147 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 RNF5Q99942 180 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 C20orf24Q9BUV8 137 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 SLC25A22Q9H936 323 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 BIN3Q9NQY0 253 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 NDUFA4L2Q9NRX3 87 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 INSIG2Q9Y5U4 225 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 PXMP4Q9Y6I8 212 aa4.69□□□□□ -1.66
VPS39-209ENST00000568029 HEATR1Q9H583 2144 aaKnown RBP4.69□□□□□ -1.66
VPS39-209ENST00000568029 IGHV2-26A0A0B4J1V2 119 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 ZNF727A8MUV8 499 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 F6UZH7 168 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 BUB1B-PAK6H3BSN5 160 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 M0R1W7 72 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 CLN5O75503 358 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 FCN3O75636 299 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 CRYBA1P05813 215 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 IGKV2-30P06310 120 aa4.68□□□□□ -1.66
VPS39-209ENST00000568029 SOD3P08294 240 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms