RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 IGF2BP2-AS1Q96M15 143 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 FAM103A1Q9BTL3 118 aaKnown RBP10.72□□□□□ -0.69
VPS4A-204ENST00000566354 NRN1Q9NPD7 142 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 ZNF253O75346 499 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 REG1AP05451 166 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 RNASE2P10153 161 aaKnown RBP10.72□□□□□ -0.69
VPS4A-204ENST00000566354 AMTP48728 403 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 CD69Q07108 199 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 MTURNQ8N3F0 131 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 OR9G1Q8NH87 305 aa10.72□□□□□ -0.69
VPS4A-204ENST00000566354 RPUSD1Q9UJJ7 312 aaKnown RBP10.72□□□□□ -0.69
VPS4A-204ENST00000566354 HRNRQ86YZ3 2850 aaPredicted RBP10.71□□□□□ -0.69
VPS4A-204ENST00000566354 A0A1W2PS18 150 aa10.71□□□□□ -0.69
VPS4A-204ENST00000566354 MGST1P10620 155 aaKnown RBP10.71□□□□□ -0.69
VPS4A-204ENST00000566354 TCL1AP56279 114 aa10.71□□□□□ -0.69
VPS4A-204ENST00000566354 KIAA1644Q3SXP7 199 aa10.71□□□□□ -0.69
VPS4A-204ENST00000566354 DUX4L9Q6RFH8 374 aaPredicted RBP10.71□□□□□ -0.69
VPS4A-204ENST00000566354 SSX8Q7RTT4 187 aa10.71□□□□□ -0.69
VPS4A-204ENST00000566354 COMMD5Q9GZQ3 224 aa10.71□□□□□ -0.69
VPS4A-204ENST00000566354 CDC42EP3Q9UKI2 254 aa10.71□□□□□ -0.69
VPS4A-204ENST00000566354 TANC2Q9HCD6 1990 aa10.71□□□□□ -0.7
VPS4A-204ENST00000566354 FAM208BQ5VWN6 2430 aa10.71□□□□□ -0.7
VPS4A-204ENST00000566354 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.7□□□□□ -0.7
VPS4A-204ENST00000566354 IZUMO1RA6ND01 250 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 BMPR1BO00238 502 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 SLC35B1P78383 322 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 RHOGP84095 191 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 Q8N976 141 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 GAFA1Q96PS6 74 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 CST9LQ9H4G1 147 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 NGBQ9NPG2 151 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 SERTAD4Q9NUC0 356 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 SAA1P0DJI8 122 aaPredicted RBP10.7□□□□□ -0.7
VPS4A-204ENST00000566354 SRIP30626 198 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 MLANAQ16655 118 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 Q5PR19 223 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 RASL11AQ6T310 242 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 ZNF788Q6ZQV5 615 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 NUP37Q8NFH4 326 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 OSR1Q8TAX0 266 aaPredicted RBP10.7□□□□□ -0.7
VPS4A-204ENST00000566354 RNF114Q9Y508 228 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 DOPEY1Q5JWR5 2465 aa10.7□□□□□ -0.7
VPS4A-204ENST00000566354 PSMB11A5LHX3 300 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 ZNF324O75467 553 aaPredicted RBP10.69□□□□□ -0.7
VPS4A-204ENST00000566354 APCSP02743 223 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 ERHP84090 104 aaKnown RBP10.69□□□□□ -0.7
VPS4A-204ENST00000566354 TNFAIP6P98066 277 aaPredicted RBP10.69□□□□□ -0.7
VPS4A-204ENST00000566354 MRPL54Q6P161 138 aaKnown RBP10.69□□□□□ -0.7
VPS4A-204ENST00000566354 DEFB108BQ8NET1 73 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 FAM167A-AS1Q96KT0 104 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 ZNF714Q96N38 554 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 RCHY1Q96PM5 261 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 CCL13Q99616 98 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 ZNF331Q9NQX6 463 aaPredicted RBP10.69□□□□□ -0.7
VPS4A-204ENST00000566354 COX11Q9Y6N1 276 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 SHISA9B4DS77 424 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 CTRLP40313 264 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 UBE2L3P68036 154 aaKnown RBP10.69□□□□□ -0.7
VPS4A-204ENST00000566354 FBLN7Q53RD9 439 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 OR10W1Q8NGF6 305 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 WIPF2Q8TF74 440 aaPredicted RBP10.69□□□□□ -0.7
VPS4A-204ENST00000566354 SLC25A2Q9BXI2 301 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 NDUFA4L2Q9NRX3 87 aa10.69□□□□□ -0.7
VPS4A-204ENST00000566354 TNCP24821 2201 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 hADV38S2A0JD32 116 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 INS-IGF2F8WCM5 200 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 PLAUP00749 431 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 PMCHP20382 165 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 OXLD1Q5BKU9 147 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 ZNF833PQ6ZTB9 187 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 FAM231DQ6ZW35 169 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 RALYQ9UKM9 306 aaKnown RBP10.68□□□□□ -0.7
VPS4A-204ENST00000566354 DCHS2Q6V1P9 2916 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 IGHV1-46P01743 117 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 APOA2P02652 100 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 USF1P22415 310 aaPredicted RBP10.68□□□□□ -0.7
VPS4A-204ENST00000566354 ADIPOQQ15848 244 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 C19orf35Q6ZS72 473 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 FAM216BQ8N7L0 139 aa10.68□□□□□ -0.7
VPS4A-204ENST00000566354 CITED2Q99967 270 aaPredicted RBP10.68□□□□□ -0.7
VPS4A-204ENST00000566354 MRPL27Q9P0M9 148 aaKnown RBP10.68□□□□□ -0.7
VPS4A-204ENST00000566354 AMMECR1Q9Y4X0 333 aaPredicted RBP10.68□□□□□ -0.7
VPS4A-204ENST00000566354 UBR5O95071 2799 aaPredicted RBP10.68□□□□□ -0.7
VPS4A-204ENST00000566354 UTP20O75691 2785 aaKnown RBP10.67□□□□□ -0.7
VPS4A-204ENST00000566354 TNFSF4P23510 183 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 RPL8P62917 257 aaKnown RBP10.67□□□□□ -0.7
VPS4A-204ENST00000566354 SPATA45Q537H7 98 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 OR2T6Q8NHC8 308 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 TSKUQ8WUA8 353 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 LINC00312Q9Y6C7 94 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 LRRK2Q5S007 2527 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 TRAV5A0A0B4J249 113 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 E7EQL1 145 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 C19orf84I3L1E1 186 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 CD3EP07766 207 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 MORN5Q5VZ52 161 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 NIT1Q86X76 327 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 OR1L4Q8NGR5 311 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 MBD6Q96DN6 1003 aa10.67□□□□□ -0.7
VPS4A-204ENST00000566354 HARBI1Q96MB7 349 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms