RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 CAMPP49913 170 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 TAS2R45P59539 299 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 TXNDC17Q9BRA2 123 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 PAXXQ9BUH6 204 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 CSTL1Q9H114 145 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 AMMECR1Q9Y4X0 333 aaPredicted RBP10.85□□□□□ -0.67
CLK3-215ENST00000564353 A0A1W2PN81 502 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 C9JCJ5 164 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 E7EQL1 145 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 FAM87AP0C7U9 286 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 ATOH7Q8N100 152 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 NUP37Q8NFH4 326 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 RNASE6Q93091 150 aaKnown RBP10.85□□□□□ -0.67
CLK3-215ENST00000564353 RNF2Q99496 336 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 COL6A6A6NMZ7 2263 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 AKAP6Q13023 2319 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 IGKV1D-37A0A075B6S9 117 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 C22orf46C9J442 243 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 IGLV2-23P01705 113 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 MFAP2P55001 183 aa10.85□□□□□ -0.67
CLK3-215ENST00000564353 FOXC1Q12948 553 aa10.84□□□□□ -0.67
CLK3-215ENST00000564353 ZNF253O75346 499 aa10.84□□□□□ -0.67
CLK3-215ENST00000564353 TPPP2P59282 170 aa10.84□□□□□ -0.67
CLK3-215ENST00000564353 TMEM95Q3KNT9 176 aa10.84□□□□□ -0.67
CLK3-215ENST00000564353 FBXL7Q9UJT9 491 aa10.84□□□□□ -0.67
CLK3-215ENST00000564353 PSMB11A5LHX3 300 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 USF1P22415 310 aaPredicted RBP10.83□□□□□ -0.68
CLK3-215ENST00000564353 AMTP48728 403 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 SELENOTP62341 195 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 SLAQ13239 276 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 LINC00574Q9H8X3 128 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 SSUH2Q9Y2M2 353 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 WASHC3Q9Y3C0 194 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 FAM90A27PA6NNH2 459 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 PPOXP50336 477 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 TMEM177Q53S58 311 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 ZNF841Q6ZN19 808 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 TMEM136Q6ZRR5 245 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 Q6ZVH6 145 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 IGF2BP2-AS1Q96M15 143 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 TBL2Q9Y4P3 447 aaKnown RBP10.83□□□□□ -0.68
CLK3-215ENST00000564353 SPTBN4Q9H254 2564 aa10.83□□□□□ -0.68
CLK3-215ENST00000564353 IGHV1-8P0DP01 117 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 CX3CL1P78423 397 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 WNT10AQ9GZT5 417 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 TNFRSF19Q9NS68 423 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 CDC42EP3Q9UKI2 254 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 CELSR1Q9NYQ6 3014 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 CACNA1BQ00975 2339 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 MAP1AP78559 2803 aaPredicted RBP10.82□□□□□ -0.68
CLK3-215ENST00000564353 TRAV8-1A0A0A6YYK1 113 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 PGPA6NDG6 321 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 SLC25A5P05141 298 aaKnown RBP10.82□□□□□ -0.68
CLK3-215ENST00000564353 ZNF329Q86UD4 541 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 SIGLECL1Q8N7X8 197 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 TMEM167AQ8TBQ9 72 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 FBXL15Q9H469 300 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 PTPRQQ9UMZ3 2332 aa10.82□□□□□ -0.68
CLK3-215ENST00000564353 SHISA9B4DS77 424 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 BMPR1BO00238 502 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 TPTE2P1Q5T6R2 138 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 IGHV1-69-2A0A0G2JMI3 117 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 TCRBV4S1A1TA0A5B7 111 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 K7EP13 123 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 PPBPP02775 128 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 MEF2CQ06413 473 aaPredicted RBP10.81□□□□□ -0.68
CLK3-215ENST00000564353 MRGPRG-AS1Q2M3A8 158 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 GDF5OSQ5U4N7 250 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 TCF24Q7RTU0 167 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 ST6GALNAC6Q969X2 333 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 FXYD5Q96DB9 178 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 ANKHD1Q8IWZ3 2542 aaKnown RBP10.81□□□□□ -0.68
CLK3-215ENST00000564353 VPS13CQ709C8 3753 aa10.81□□□□□ -0.68
CLK3-215ENST00000564353 LOC105371242A0A075B767 164 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 A0A1W2PRE2 83 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 PEX7O00628 323 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 VMA21Q3ZAQ7 101 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 LINC00322Q6ZN03 302 aaPredicted RBP10.8□□□□□ -0.68
CLK3-215ENST00000564353 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.8□□□□□ -0.68
CLK3-215ENST00000564353 NDUFS8O00217 210 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 PLGLAQ15195 96 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 COL5A1-AS1Q5SY13 56 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 C1orf194Q5T5A4 169 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 PDPNQ86YL7 162 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 TMEM186Q96B77 213 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 CLEC5AQ9NY25 188 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 ZNF835Q9Y2P0 537 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 LYZP61626 148 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 PMCHL1Q16048 86 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 C3orf36Q3SXR2 165 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 KLF17Q5JT82 389 aaPredicted RBP10.8□□□□□ -0.68
CLK3-215ENST00000564353 LCN12Q6JVE5 192 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 OR2D3Q8NGH3 330 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 TIMM8BQ9Y5J9 83 aaPredicted RBP10.8□□□□□ -0.68
CLK3-215ENST00000564353 HILPDAQ9Y5L2 63 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 INSIG2Q9Y5U4 225 aa10.8□□□□□ -0.68
CLK3-215ENST00000564353 HRNRQ86YZ3 2850 aaPredicted RBP10.79□□□□□ -0.68
CLK3-215ENST00000564353 A0A1W2PS18 150 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 IGLC7A0M8Q6 106 aa10.79□□□□□ -0.68
CLK3-215ENST00000564353 VWC2LB2RUY7 222 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms