RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 C11orf68Q9H3H3 251 aaKnown RBP12.91□□□□□ -0.34
NME3-205ENST00000563854 DUXBA0A1W2PPF3 345 aa12.9□□□□□ -0.34
NME3-205ENST00000563854 C4BPBP20851 252 aa12.9□□□□□ -0.34
NME3-205ENST00000563854 AP2S1P53680 142 aaPredicted RBP12.9□□□□□ -0.34
NME3-205ENST00000563854 SIGLEC15Q6ZMC9 328 aa12.9□□□□□ -0.34
NME3-205ENST00000563854 RNF125Q96EQ8 232 aa12.9□□□□□ -0.34
NME3-205ENST00000563854 CLEC5AQ9NY25 188 aa12.9□□□□□ -0.34
NME3-205ENST00000563854 SPP1P10451 314 aa12.89□□□□□ -0.35
NME3-205ENST00000563854 INPP1P49441 399 aa12.89□□□□□ -0.35
NME3-205ENST00000563854 LYZP61626 148 aa12.89□□□□□ -0.35
NME3-205ENST00000563854 ZNF90Q03938 601 aa12.89□□□□□ -0.35
NME3-205ENST00000563854 PPP1R1AQ13522 171 aa12.89□□□□□ -0.35
NME3-205ENST00000563854 GAMTQ14353 236 aa12.89□□□□□ -0.35
NME3-205ENST00000563854 MORN3Q6PF18 240 aaPredicted RBP12.89□□□□□ -0.35
NME3-205ENST00000563854 CENPSQ8N2Z9 138 aa12.89□□□□□ -0.35
NME3-205ENST00000563854 SLC25A21Q9BQT8 299 aaPredicted RBP12.89□□□□□ -0.35
NME3-205ENST00000563854 MFFQ9GZY8 342 aa12.89□□□□□ -0.35
NME3-205ENST00000563854 NRN1Q9NPD7 142 aa12.89□□□□□ -0.35
NME3-205ENST00000563854 FAM90A26D6RGX4 464 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 BUB3O43684 328 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 SFT2D2O95562 160 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 HOXB5P09067 269 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 SNRPD3P62318 126 aaKnown RBP12.88□□□□□ -0.35
NME3-205ENST00000563854 RAB11AP62491 216 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 OR2F1Q13607 317 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 SPANXN2Q5MJ10 180 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 CCDC190Q86UF4 302 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 RAB40CQ96S21 281 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 MAGT1Q9H0U3 335 aa12.88□□□□□ -0.35
NME3-205ENST00000563854 IGHV4-28A0A0C4DH34 117 aa12.87□□□□□ -0.35
NME3-205ENST00000563854 PITX3O75364 302 aa12.87□□□□□ -0.35
NME3-205ENST00000563854 GIG44P09565 113 aaPredicted RBP12.87□□□□□ -0.35
NME3-205ENST00000563854 GPX4P36969 197 aaPredicted RBP12.87□□□□□ -0.35
NME3-205ENST00000563854 TMEM41BQ5BJD5 291 aa12.87□□□□□ -0.35
NME3-205ENST00000563854 PPP1R14BQ96C90 147 aa12.87□□□□□ -0.35
NME3-205ENST00000563854 RBM38Q9H0Z9 239 aaKnown RBP12.87□□□□□ -0.35
NME3-205ENST00000563854 AGRNO00468 2067 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 IGKV1D-37A0A075B6S9 117 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 LINC00854A0A1B0GVQ3 168 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 WRBO00258 174 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 MED6O75586 246 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 FABP1P07148 127 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 NUP62P37198 522 aaPredicted RBP12.86□□□□□ -0.35
NME3-205ENST00000563854 ATP5IP56385 69 aaPredicted RBP12.86□□□□□ -0.35
NME3-205ENST00000563854 TRIQKQ629K1 86 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 LRTM2Q8N967 370 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 Q8NAQ8 132 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 PFDN2Q9UHV9 154 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 TMED3Q9Y3Q3 217 aa12.86□□□□□ -0.35
NME3-205ENST00000563854 H3BP45 60 aa12.85□□□□□ -0.35
NME3-205ENST00000563854 GGNBP1Q5YKI7 109 aa12.85□□□□□ -0.35
NME3-205ENST00000563854 OR8G2PQ6IF36 304 aa12.85□□□□□ -0.35
NME3-205ENST00000563854 GSG1LQ6UXU4 331 aa12.85□□□□□ -0.35
NME3-205ENST00000563854 DEDD2Q8WXF8 326 aa12.85□□□□□ -0.35
NME3-205ENST00000563854 SRRQ9GZT4 340 aa12.85□□□□□ -0.35
NME3-205ENST00000563854 SYNGR2O43760 224 aa12.84□□□□□ -0.35
NME3-205ENST00000563854 IGKV3-20P01619 116 aa12.84□□□□□ -0.35
NME3-205ENST00000563854 RBMY1A1P0DJD3 496 aaKnown RBP12.84□□□□□ -0.35
NME3-205ENST00000563854 RBMY1CP0DJD4 496 aa12.84□□□□□ -0.35
NME3-205ENST00000563854 SLC25A6P12236 298 aa12.84□□□□□ -0.35
NME3-205ENST00000563854 RPP30P78346 268 aaKnown RBP12.84□□□□□ -0.35
NME3-205ENST00000563854 RBMY1FQ15415 496 aaKnown RBP12.84□□□□□ -0.35
NME3-205ENST00000563854 LINC00052Q96N35 136 aa12.84□□□□□ -0.35
NME3-205ENST00000563854 CIB3Q96Q77 187 aaPredicted RBP12.84□□□□□ -0.35
NME3-205ENST00000563854 TBC1D24Q9ULP9 559 aa12.84□□□□□ -0.35
NME3-205ENST00000563854 SNRPGP15A8MWD9 76 aa12.83□□□□□ -0.36
NME3-205ENST00000563854 ADAP1O75689 374 aa12.83□□□□□ -0.36
NME3-205ENST00000563854 MIFP14174 115 aa12.83□□□□□ -0.36
NME3-205ENST00000563854 DEFB1P60022 68 aa12.83□□□□□ -0.36
NME3-205ENST00000563854 SPANXN5Q5MJ07 72 aa12.83□□□□□ -0.36
NME3-205ENST00000563854 COQ8AQ8NI60 647 aa12.83□□□□□ -0.36
NME3-205ENST00000563854 XCL2Q9UBD3 114 aa12.83□□□□□ -0.36
NME3-205ENST00000563854 DEDDO75618 318 aa12.82□□□□□ -0.36
NME3-205ENST00000563854 NUTF2P61970 127 aaKnown RBP12.82□□□□□ -0.36
NME3-205ENST00000563854 AKR1C1Q04828 323 aa12.82□□□□□ -0.36
NME3-205ENST00000563854 BAK1Q16611 211 aa12.82□□□□□ -0.36
NME3-205ENST00000563854 RPP25LQ8N5L8 163 aaKnown RBP12.82□□□□□ -0.36
NME3-205ENST00000563854 C2CD4CQ8TF44 421 aa12.82□□□□□ -0.36
NME3-205ENST00000563854 TRGV9Q99603 122 aa12.82□□□□□ -0.36
NME3-205ENST00000563854 WDR12Q9GZL7 423 aaKnown RBP12.82□□□□□ -0.36
NME3-205ENST00000563854 FLVCR2Q9UPI3 526 aa12.82□□□□□ -0.36
NME3-205ENST00000563854 X6R8D5 127 aa12.82□□□□□ -0.36
NME3-205ENST00000563854 IGKV1OR2-108A0A075B7D4 117 aa12.81□□□□□ -0.36
NME3-205ENST00000563854 C9orf170A2RU37 121 aa12.81□□□□□ -0.36
NME3-205ENST00000563854 ZNF705EA8MWA4 302 aaPredicted RBP12.81□□□□□ -0.36
NME3-205ENST00000563854 H3BMM0 161 aa12.81□□□□□ -0.36
NME3-205ENST00000563854 ZNF701M0R085 212 aaPredicted RBP12.81□□□□□ -0.36
NME3-205ENST00000563854 ID1P41134 155 aa12.81□□□□□ -0.36
NME3-205ENST00000563854 FXYD7P58549 80 aa12.81□□□□□ -0.36
NME3-205ENST00000563854 OR8I2Q8N0Y5 310 aa12.81□□□□□ -0.36
NME3-205ENST00000563854 C1QTNF4Q9BXJ3 329 aa12.81□□□□□ -0.36
NME3-205ENST00000563854 SEPSECSQ9HD40 501 aaKnown RBP12.81□□□□□ -0.36
NME3-205ENST00000563854 STRAPQ9Y3F4 350 aaKnown RBP12.81□□□□□ -0.36
NME3-205ENST00000563854 ELOA3CA0A087WX78 387 aaPredicted RBP12.8□□□□□ -0.36
NME3-205ENST00000563854 SMCO3A2RU48 225 aa12.8□□□□□ -0.36
NME3-205ENST00000563854 NAP1L6A6NFF2 107 aa12.8□□□□□ -0.36
NME3-205ENST00000563854 IGLL5B9A064 214 aa12.8□□□□□ -0.36
NME3-205ENST00000563854 NDUFB6O95139 128 aa12.8□□□□□ -0.36
NME3-205ENST00000563854 HLA-DRB4P13762 266 aa12.8□□□□□ -0.36
NME3-205ENST00000563854 HLA-DMBP28068 263 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms