RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ZFAND3Q9H8U3 227 aa12.7□□□□□ -0.38
VPS4A-202ENST00000562754 PUS1Q9Y606 427 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS4A-202ENST00000562754 IGHV3OR16-8A0A075B7F1 116 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 NDUFA4O00483 81 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 RD3LP0DJH9 198 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 MYCNOSP40205 109 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 KLF5Q13887 457 aaPredicted RBP12.69□□□□□ -0.38
VPS4A-202ENST00000562754 KRTAP21-3Q3LHN1 58 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 TOMM20LQ6UXN7 152 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 GPHB5Q86YW7 130 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 BPIFCQ8NFQ6 507 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 SCGB1C1Q8TD33 95 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 TMEM190Q8WZ59 177 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 PPP1R14BQ96C90 147 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 ZNF471Q9BX82 626 aaPredicted RBP12.69□□□□□ -0.38
VPS4A-202ENST00000562754 ARV1Q9H2C2 271 aa12.69□□□□□ -0.38
VPS4A-202ENST00000562754 JTBO76095 146 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 TSPAN15O95858 294 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 FABP1P07148 127 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 LINC00869P0C866 280 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 ATP6V0CP27449 155 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 SYNJ2BPP57105 145 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 SELENOTP62341 195 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 PRR20EP86478 221 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 PRR20CP86479 221 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 PRR20DP86480 221 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 PRR20BP86481 221 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 PRR20AP86496 221 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 RAB31Q13636 194 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 C1QL4Q86Z23 238 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 STPG3Q8N7X2 389 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 DLX4Q92988 240 aaPredicted RBP12.68□□□□□ -0.38
VPS4A-202ENST00000562754 GINS3Q9BRX5 216 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 SH3BGRL3Q9H299 93 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 PXMP4Q9Y6I8 212 aa12.68□□□□□ -0.38
VPS4A-202ENST00000562754 WI2-2373I1.2A0A1W2PRP0 233 aa12.67□□□□□ -0.38
VPS4A-202ENST00000562754 IL4P05112 153 aa12.67□□□□□ -0.38
VPS4A-202ENST00000562754 RPL29P47914 159 aaKnown RBP12.67□□□□□ -0.38
VPS4A-202ENST00000562754 LYZP61626 148 aa12.67□□□□□ -0.38
VPS4A-202ENST00000562754 USF2Q15853 346 aaPredicted RBP12.67□□□□□ -0.38
VPS4A-202ENST00000562754 REC114Q7Z4M0 266 aa12.67□□□□□ -0.38
VPS4A-202ENST00000562754 OR4F17Q8NGA8 305 aa12.67□□□□□ -0.38
VPS4A-202ENST00000562754 OR51G1Q8NGK1 321 aa12.67□□□□□ -0.38
VPS4A-202ENST00000562754 Q8WTZ3 238 aa12.67□□□□□ -0.38
VPS4A-202ENST00000562754 OR4F4Q96R69 305 aa12.67□□□□□ -0.38
VPS4A-202ENST00000562754 TIMM9Q9Y5J7 89 aa12.67□□□□□ -0.38
VPS4A-202ENST00000562754 YIF1AO95070 293 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 B2MP61769 119 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 FAM106AQ4KMX7 169 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 LINC00482Q8N8I6 264 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 ZNF709Q8N972 641 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 SPATA3Q8NHX4 192 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 STOML3Q8TAV4 291 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 RNF125Q96EQ8 232 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 C20orf24Q9BUV8 137 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 SLC39A9Q9NUM3 307 aa12.66□□□□□ -0.38
VPS4A-202ENST00000562754 ZNF320A2RRD8 509 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 A8MWP6 167 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 C17orf112F2Z3M2 114 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 LGALS9O00182 355 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 ZNF207O43670 478 aaKnown RBP12.65□□□□□ -0.38
VPS4A-202ENST00000562754 PF4P02776 101 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 EDN2P20800 178 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 PLP1P60201 277 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 SLC51BQ86UW2 128 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 PSMG3Q9BT73 122 aaPredicted RBP12.65□□□□□ -0.38
VPS4A-202ENST00000562754 PBDC1Q9BVG4 233 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 KCNIP2Q9NS61 270 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 DOK5Q9P104 306 aa12.65□□□□□ -0.38
VPS4A-202ENST00000562754 TMEM213A2RRL7 107 aa12.64□□□□□ -0.39
VPS4A-202ENST00000562754 M0QZ24 198 aa12.64□□□□□ -0.39
VPS4A-202ENST00000562754 TPT1P13693 172 aaKnown RBP12.64□□□□□ -0.39
VPS4A-202ENST00000562754 ELLP55199 621 aaPredicted RBP12.64□□□□□ -0.39
VPS4A-202ENST00000562754 TM4SF20Q53R12 229 aa12.64□□□□□ -0.39
VPS4A-202ENST00000562754 GCSAMLQ5JQS6 135 aa12.64□□□□□ -0.39
VPS4A-202ENST00000562754 FFAR4Q5NUL3 377 aa12.64□□□□□ -0.39
VPS4A-202ENST00000562754 ST8SIA2Q92186 375 aa12.64□□□□□ -0.39
VPS4A-202ENST00000562754 GNPNAT1Q96EK6 184 aaPredicted RBP12.64□□□□□ -0.39
VPS4A-202ENST00000562754 SLC25A32Q9H2D1 315 aa12.64□□□□□ -0.39
VPS4A-202ENST00000562754 ANK2Q01484 3957 aa12.64□□□□□ -0.39
VPS4A-202ENST00000562754 CFDP00746 253 aaPredicted RBP12.63□□□□□ -0.39
VPS4A-202ENST00000562754 SPP1P10451 314 aa12.63□□□□□ -0.39
VPS4A-202ENST00000562754 ORM2P19652 201 aa12.63□□□□□ -0.39
VPS4A-202ENST00000562754 C4BPBP20851 252 aa12.63□□□□□ -0.39
VPS4A-202ENST00000562754 PATE2Q6UY27 113 aa12.63□□□□□ -0.39
VPS4A-202ENST00000562754 BAP18Q8IXM2 172 aa12.63□□□□□ -0.39
VPS4A-202ENST00000562754 OR9G4Q8NGQ1 327 aa12.63□□□□□ -0.39
VPS4A-202ENST00000562754 OR1B1Q8NGR6 318 aa12.63□□□□□ -0.39
VPS4A-202ENST00000562754 OR2G3Q8NGZ4 309 aa12.63□□□□□ -0.39
VPS4A-202ENST00000562754 UFC1Q9Y3C8 167 aa12.63□□□□□ -0.39
VPS4A-202ENST00000562754 OVOL1O14753 267 aa12.62□□□□□ -0.39
VPS4A-202ENST00000562754 EIF5AP63241 154 aaKnown RBP12.62□□□□□ -0.39
VPS4A-202ENST00000562754 IL34Q6ZMJ4 242 aa12.62□□□□□ -0.39
VPS4A-202ENST00000562754 TMEM37Q8WXS4 190 aa12.62□□□□□ -0.39
VPS4A-202ENST00000562754 VSIRQ9H7M9 311 aa12.62□□□□□ -0.39
VPS4A-202ENST00000562754 DAZ1Q9NQZ3 744 aaKnown RBP12.62□□□□□ -0.39
VPS4A-202ENST00000562754 PLA2G2EQ9NZK7 142 aa12.62□□□□□ -0.39
VPS4A-202ENST00000562754 MRPL27Q9P0M9 148 aaKnown RBP12.62□□□□□ -0.39
VPS4A-202ENST00000562754 VWFP04275 2813 aa12.61□□□□□ -0.39
VPS4A-202ENST00000562754 IGHV3-49A0A0A0MS15 119 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms