RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 A8MTW9 85 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 PAX9P55771 341 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 SSBP1Q04837 148 aaKnown RBP11.67□□□□□ -0.54
CLN3-208ENST00000561505 ZNF79Q15937 498 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 SPATA31B1PQ5VZV4 182 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 OR8G2PQ6IF36 304 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 FOXI2Q6ZQN5 318 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 NOXA1Q86UR1 476 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 C15orf40Q8WUR7 153 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 KRTAP4-5Q9BYR2 181 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 VCX3AQ9NNX9 186 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 CACNG5Q9UF02 275 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 GPR132Q9UNW8 380 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 RFNGQ9Y644 331 aa11.67□□□□□ -0.54
CLN3-208ENST00000561505 HSPG2P98160 4391 aa11.66□□□□□ -0.54
CLN3-208ENST00000561505 RAB3DO95716 219 aa11.66□□□□□ -0.54
CLN3-208ENST00000561505 NUP62P37198 522 aaPredicted RBP11.66□□□□□ -0.54
CLN3-208ENST00000561505 TAS2R19P59542 299 aa11.66□□□□□ -0.54
CLN3-208ENST00000561505 C1orf194Q5T5A4 169 aa11.66□□□□□ -0.54
CLN3-208ENST00000561505 STEAP1BQ6NZ63 245 aa11.66□□□□□ -0.54
CLN3-208ENST00000561505 MZT2AQ6P582 158 aa11.66□□□□□ -0.54
CLN3-208ENST00000561505 OR51G1Q8NGK1 321 aa11.66□□□□□ -0.54
CLN3-208ENST00000561505 IL22RA2Q969J5 263 aa11.66□□□□□ -0.54
CLN3-208ENST00000561505 NAA60Q9H7X0 242 aa11.66□□□□□ -0.54
CLN3-208ENST00000561505 CRYM-AS1A6NIL9 109 aa11.65□□□□□ -0.54
CLN3-208ENST00000561505 IFNA10P01566 189 aa11.65□□□□□ -0.54
CLN3-208ENST00000561505 IFNA21P01568 189 aa11.65□□□□□ -0.54
CLN3-208ENST00000561505 PSMB3P49720 205 aa11.65□□□□□ -0.54
CLN3-208ENST00000561505 ATP5IP56385 69 aaPredicted RBP11.65□□□□□ -0.54
CLN3-208ENST00000561505 C1orf158Q8N1D5 194 aa11.65□□□□□ -0.54
CLN3-208ENST00000561505 RNASE11Q8TAA1 199 aaKnown RBP11.65□□□□□ -0.54
CLN3-208ENST00000561505 RNF125Q96EQ8 232 aa11.65□□□□□ -0.54
CLN3-208ENST00000561505 NIPSNAP3BQ9BS92 247 aa11.65□□□□□ -0.54
CLN3-208ENST00000561505 WDR12Q9GZL7 423 aaKnown RBP11.65□□□□□ -0.54
CLN3-208ENST00000561505 U3KQ87 197 aa11.65□□□□□ -0.54
CLN3-208ENST00000561505 IGKV1D-37A0A075B6S9 117 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 GABARAPH6UMI1 98 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 GABARAPO95166 117 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 TNFAIP8O95379 198 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 ZNF182P17025 639 aaPredicted RBP11.64□□□□□ -0.55
CLN3-208ENST00000561505 FAM3BP58499 235 aaPredicted RBP11.64□□□□□ -0.55
CLN3-208ENST00000561505 DEFB1P60022 68 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 CTF1Q16619 201 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 FAM222AQ5U5X8 452 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 GPR107Q5VW38 600 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 EXTL2Q9UBQ6 330 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 HSPB7Q9UBY9 170 aa11.64□□□□□ -0.55
CLN3-208ENST00000561505 CEBPZOSA8MTT3 80 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 FAM25AB3EWG3 89 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 FAM25CB3EWG5 89 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 FAM25GB3EWG6 89 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 GPX4P36969 197 aaPredicted RBP11.63□□□□□ -0.55
CLN3-208ENST00000561505 MEF2DQ14814 521 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 SCGB2B2Q4G0G5 96 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 RNASE12Q5GAN4 147 aaKnown RBP11.63□□□□□ -0.55
CLN3-208ENST00000561505 TMEM268Q5VZI3 342 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 AP3S1Q92572 193 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 ACY3Q96HD9 319 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 MIXL1Q9H2W2 232 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 PFDN2Q9UHV9 154 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 C14orf166Q9Y224 244 aaKnown RBP11.63□□□□□ -0.55
CLN3-208ENST00000561505 NACAE9PAV3 2078 aa11.63□□□□□ -0.55
CLN3-208ENST00000561505 A0A0J9YX75 114 aa11.62□□□□□ -0.55
CLN3-208ENST00000561505 ISLRO14498 428 aa11.62□□□□□ -0.55
CLN3-208ENST00000561505 ID1P41134 155 aa11.62□□□□□ -0.55
CLN3-208ENST00000561505 SUPT4H1P63272 117 aaKnown RBP11.62□□□□□ -0.55
CLN3-208ENST00000561505 MRPS10P82664 201 aaKnown RBP11.62□□□□□ -0.55
CLN3-208ENST00000561505 KLF9Q13886 244 aaPredicted RBP11.62□□□□□ -0.55
CLN3-208ENST00000561505 C17orf77Q96MU5 243 aa11.62□□□□□ -0.55
CLN3-208ENST00000561505 SLC35B3Q9H1N7 401 aa11.62□□□□□ -0.55
CLN3-208ENST00000561505 PLA2G2EQ9NZK7 142 aa11.62□□□□□ -0.55
CLN3-208ENST00000561505 IGLV2-18A0A075B6J9 118 aa11.61□□□□□ -0.55
CLN3-208ENST00000561505 SULT1A3P0DMM9 295 aa11.61□□□□□ -0.55
CLN3-208ENST00000561505 SULT1A4P0DMN0 295 aa11.61□□□□□ -0.55
CLN3-208ENST00000561505 ALDH3B2P48448 385 aa11.61□□□□□ -0.55
CLN3-208ENST00000561505 PSG9Q00887 426 aa11.61□□□□□ -0.55
CLN3-208ENST00000561505 GAMTQ14353 236 aa11.61□□□□□ -0.55
CLN3-208ENST00000561505 SOHLH1Q5JUK2 328 aa11.61□□□□□ -0.55
CLN3-208ENST00000561505 AMTNQ6UX39 209 aa11.61□□□□□ -0.55
CLN3-208ENST00000561505 ZNF575Q86XF7 245 aa11.61□□□□□ -0.55
CLN3-208ENST00000561505 CCR6P51684 374 aa11.6□□□□□ -0.55
CLN3-208ENST00000561505 EMP1P54849 157 aa11.6□□□□□ -0.55
CLN3-208ENST00000561505 ZNF90Q03938 601 aa11.6□□□□□ -0.55
CLN3-208ENST00000561505 C1orf134Q5TEV5 83 aa11.6□□□□□ -0.55
CLN3-208ENST00000561505 SMIM4Q8WVI0 70 aa11.6□□□□□ -0.55
CLN3-208ENST00000561505 GOLT1BQ9Y3E0 138 aa11.6□□□□□ -0.55
CLN3-208ENST00000561505 YTHDF2Q9Y5A9 579 aaKnown RBP11.6□□□□□ -0.55
CLN3-208ENST00000561505 LRP1BQ9NZR2 4599 aa11.6□□□□□ -0.55
CLN3-208ENST00000561505 A0A0B4J2A0 478 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 LOC102723971A0A1B0GUV8 181 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 DISC1C4P0D8 188 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 CTDSPLO15194 276 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 CDK2AP2O75956 126 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 IGKV3-20P01619 116 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 HBE1P02100 147 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 FXYD7P58549 80 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 FAM78BQ5VT40 261 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 SAMD13Q5VXD3 122 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 FAAP20Q6NZ36 180 aa11.59□□□□□ -0.55
CLN3-208ENST00000561505 UBE2DNLQ8IWF7 75 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms