RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ZFP92A6NM28 416 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 FAM90A26D6RGX4 464 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 BUB3O43684 328 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 SPP1P10451 314 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 IAPPP10997 89 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 VAMP1P23763 118 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 FAUP35544 74 aaKnown RBP7.42□□□□□ -1.22
LDLR-214ENST00000560628 ZNF90Q03938 601 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 OR2F1Q13607 317 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 GAMTQ14353 236 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 SIGLEC15Q6ZMC9 328 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 TOMM5Q8N4H5 51 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 Q8NAQ8 132 aa7.42□□□□□ -1.22
LDLR-214ENST00000560628 PLECQ15149 4684 aaKnown RBP7.42□□□□□ -1.22
LDLR-214ENST00000560628 IGKV1D-37A0A075B6S9 117 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 IGLL5B9A064 214 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 PITX3O75364 302 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 GPX4P36969 197 aaPredicted RBP7.41□□□□□ -1.22
LDLR-214ENST00000560628 DEFB1P60022 68 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 SNRPD3P62318 126 aaKnown RBP7.41□□□□□ -1.22
LDLR-214ENST00000560628 SRPXP78539 464 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 TMEM41BQ5BJD5 291 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 TMEM128Q5BJH2 165 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 LGALS9CQ6DKI2 356 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 CSNK1G2-AS1Q8NCQ2 148 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 C2CD4CQ8TF44 421 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 TRIM63Q969Q1 353 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 RNF125Q96EQ8 232 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 SLC35E1Q96K37 410 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 LINC00052Q96N35 136 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 NRN1Q9NPD7 142 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 XCL2Q9UBD3 114 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 V9GYH0 126 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 X6R8D5 127 aa7.41□□□□□ -1.22
LDLR-214ENST00000560628 BIRC6Q9NR09 4857 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 ELOA3CA0A087WX78 387 aaPredicted RBP7.4□□□□□ -1.22
LDLR-214ENST00000560628 ZNF705EA8MWA4 302 aaPredicted RBP7.4□□□□□ -1.22
LDLR-214ENST00000560628 H3BMM0 161 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 IGKV3-20P01619 116 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 MIFP14174 115 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 HLA-DMBP28068 263 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 AP3S2P59780 193 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 LYZP61626 148 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 ZNF79Q15937 498 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 MAGT1Q9H0U3 335 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 TBC1D24Q9ULP9 559 aa7.4□□□□□ -1.22
LDLR-214ENST00000560628 SNRPGP15A8MWD9 76 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 WRBO00258 174 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 SFT2D2O95562 160 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 HOXB5P09067 269 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 S100A5P33763 92 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 ATP5IP56385 69 aaPredicted RBP7.39□□□□□ -1.23
LDLR-214ENST00000560628 FXYD7P58549 80 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 RAB11AP62491 216 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 PRR20EP86478 221 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 PRR20CP86479 221 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 PRR20DP86480 221 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 PRR20BP86481 221 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 PRR20AP86496 221 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 PPP1R1AQ13522 171 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 GDF5OSQ5U4N7 250 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 ZNF767PQ75MW2 155 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 PPP1R14BQ96C90 147 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 SLC25A21Q9BQT8 299 aaPredicted RBP7.39□□□□□ -1.23
LDLR-214ENST00000560628 WDR12Q9GZL7 423 aaKnown RBP7.39□□□□□ -1.23
LDLR-214ENST00000560628 PFDN2Q9UHV9 154 aa7.39□□□□□ -1.23
LDLR-214ENST00000560628 IGKV1OR2-108A0A075B7D4 117 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 PIGBOS1A0A0B4J2F0 54 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 DUXBA0A1W2PPF3 345 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 MED6O75586 246 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 FABP1P07148 127 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 NUTF2P61970 127 aaKnown RBP7.38□□□□□ -1.23
LDLR-214ENST00000560628 SPANXN5Q5MJ07 72 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 GGNBP1Q5YKI7 109 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 OR8G2PQ6IF36 304 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 Q6ZTC4 211 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 CCDC190Q86UF4 302 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 CENPSQ8N2Z9 138 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 LRTM2Q8N967 370 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 HRH4Q9H3N8 390 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 SEPSECSQ9HD40 501 aaKnown RBP7.38□□□□□ -1.23
LDLR-214ENST00000560628 APLNQ9ULZ1 77 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 CELA1Q9UNI1 258 aa7.38□□□□□ -1.23
LDLR-214ENST00000560628 IGHV3OR16-12A0A075B7B8 117 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 LINC00854A0A1B0GVQ3 168 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 C11orf94C9JXX5 98 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 SYNGR2O43760 224 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 SLC25A6P12236 298 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 HLA-DRB4P13762 266 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 NUP62P37198 522 aaPredicted RBP7.37□□□□□ -1.23
LDLR-214ENST00000560628 ID1P41134 155 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 NKX2-1P43699 371 aaPredicted RBP7.37□□□□□ -1.23
LDLR-214ENST00000560628 OR8I2Q8N0Y5 310 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 OR4B1Q8NGF8 309 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 TRGV9Q99603 122 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 C1QTNF4Q9BXJ3 329 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 TMED3Q9Y3Q3 217 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 HLA-DRB4X5D2U9 266 aa7.37□□□□□ -1.23
LDLR-214ENST00000560628 TRAV10A0A0B4J240 114 aa7.36□□□□□ -1.23
LDLR-214ENST00000560628 F6UB75 175 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms