RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 LCE2DQ5TA82 110 aaPredicted RBP8.8□□□□□ -1
USP3-218ENST00000560202 TEPPQ6URK8 271 aa8.8□□□□□ -1
USP3-218ENST00000560202 Q71RC1 249 aaPredicted RBP8.8□□□□□ -1
USP3-218ENST00000560202 OR2G3Q8NGZ4 309 aa8.8□□□□□ -1
USP3-218ENST00000560202 ACY3Q96HD9 319 aa8.8□□□□□ -1
USP3-218ENST00000560202 PSMG3Q9BT73 122 aaPredicted RBP8.8□□□□□ -1
USP3-218ENST00000560202 NDUFAF3Q9BU61 184 aa8.8□□□□□ -1
USP3-218ENST00000560202 NPCDR1Q9BY65 106 aa8.8□□□□□ -1
USP3-218ENST00000560202 PRSS22Q9GZN4 317 aa8.8□□□□□ -1
USP3-218ENST00000560202 NPFFR1Q9GZQ6 430 aa8.8□□□□□ -1
USP3-218ENST00000560202 PLA2G2EQ9NZK7 142 aa8.8□□□□□ -1
USP3-218ENST00000560202 LSM4Q9Y4Z0 139 aaKnown RBP8.8□□□□□ -1
USP3-218ENST00000560202 IGHV3-21A0A0B4J1V1 117 aa8.79□□□□□ -1
USP3-218ENST00000560202 K7EIM0 57 aa8.79□□□□□ -1
USP3-218ENST00000560202 HSPB1P04792 205 aaKnown RBP8.79□□□□□ -1
USP3-218ENST00000560202 ZNF616Q08AN1 781 aa8.79□□□□□ -1
USP3-218ENST00000560202 PNRC1Q12796 327 aaPredicted RBP8.79□□□□□ -1
USP3-218ENST00000560202 ZNF674Q2M3X9 581 aa8.79□□□□□ -1
USP3-218ENST00000560202 KLK9Q2XQG4 91 aa8.79□□□□□ -1
USP3-218ENST00000560202 DPPA3Q6W0C5 159 aa8.79□□□□□ -1
USP3-218ENST00000560202 CENPVQ7Z7K6 275 aaPredicted RBP8.79□□□□□ -1
USP3-218ENST00000560202 ZNF709Q8N972 641 aa8.79□□□□□ -1
USP3-218ENST00000560202 NPIPB3Q92617 1050 aa8.79□□□□□ -1
USP3-218ENST00000560202 MGST2Q99735 147 aa8.79□□□□□ -1
USP3-218ENST00000560202 ACTR3CQ9C0K3 210 aaPredicted RBP8.79□□□□□ -1
USP3-218ENST00000560202 THYN1Q9P016 225 aa8.79□□□□□ -1
USP3-218ENST00000560202 MRPL36Q9P0J6 103 aaKnown RBP8.79□□□□□ -1
USP3-218ENST00000560202 KLK9Q9UKQ9 250 aa8.79□□□□□ -1
USP3-218ENST00000560202 TIMM9Q9Y5J7 89 aa8.79□□□□□ -1
USP3-218ENST00000560202 SONP18583 2426 aaKnown RBP8.78□□□□□ -1
USP3-218ENST00000560202 IGKV1OR2-108A0A075B7D4 117 aa8.78□□□□□ -1
USP3-218ENST00000560202 CYSRT1A8MQ03 144 aa8.78□□□□□ -1
USP3-218ENST00000560202 INAFM1C9JVW0 142 aa8.78□□□□□ -1
USP3-218ENST00000560202 C17orf112F2Z3M2 114 aa8.78□□□□□ -1
USP3-218ENST00000560202 SOX15O60248 233 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST1H2BKO60814 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 OR2J3O76001 311 aa8.78□□□□□ -1
USP3-218ENST00000560202 GCGP01275 180 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST1H2BJP06899 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST1H2BOP23527 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST1H2BBP33778 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 RND2P52198 227 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST1H2BDP58876 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST1H2BCP62807 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 RAB31Q13636 194 aa8.78□□□□□ -1
USP3-218ENST00000560202 JOSD1Q15040 202 aaPredicted RBP8.78□□□□□ -1
USP3-218ENST00000560202 ELOBQ15370 118 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST2H2BEQ16778 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.78□□□□□ -1
USP3-218ENST00000560202 AKR1C8PQ5T2L2 129 aa8.78□□□□□ -1
USP3-218ENST00000560202 TMEM182Q6ZP80 229 aaPredicted RBP8.78□□□□□ -1
USP3-218ENST00000560202 ARL6IP6Q8N6S5 226 aa8.78□□□□□ -1
USP3-218ENST00000560202 TMEM116Q8NCL8 245 aa8.78□□□□□ -1
USP3-218ENST00000560202 ZNF418Q8TF45 676 aaPredicted RBP8.78□□□□□ -1
USP3-218ENST00000560202 HIST1H2BHQ93079 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 TVP23CQ96ET8 276 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST1H2BNQ99877 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIST1H2BMQ99879 126 aa8.78□□□□□ -1
USP3-218ENST00000560202 ESM1Q9NQ30 184 aa8.78□□□□□ -1
USP3-218ENST00000560202 ZNF355PQ9NSJ1 428 aa8.78□□□□□ -1
USP3-218ENST00000560202 ZNF580Q9UK33 172 aa8.78□□□□□ -1
USP3-218ENST00000560202 CLDN34H7C241 214 aa8.78□□□□□ -1
USP3-218ENST00000560202 NDUFB8O95169 186 aa8.78□□□□□ -1
USP3-218ENST00000560202 HBE1P02100 147 aa8.78□□□□□ -1
USP3-218ENST00000560202 PPIFP30405 207 aaKnown RBP8.78□□□□□ -1
USP3-218ENST00000560202 TAGLN2P37802 199 aaKnown RBP8.78□□□□□ -1
USP3-218ENST00000560202 NUTF2P61970 127 aaKnown RBP8.78□□□□□ -1
USP3-218ENST00000560202 SERF2P84101 59 aa8.78□□□□□ -1
USP3-218ENST00000560202 TMEM95Q3KNT9 176 aa8.78□□□□□ -1
USP3-218ENST00000560202 KHDC3LQ587J8 217 aa8.78□□□□□ -1
USP3-218ENST00000560202 ACSM6Q6P461 480 aa8.78□□□□□ -1
USP3-218ENST00000560202 GGTLC1Q9BX51 225 aa8.78□□□□□ -1
USP3-218ENST00000560202 ZNF702PQ9H963 129 aa8.78□□□□□ -1
USP3-218ENST00000560202 FBXL7Q9UJT9 491 aa8.78□□□□□ -1
USP3-218ENST00000560202 HIVEP1P15822 2718 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 SETXQ7Z333 2677 aaKnown RBP8.77□□□□□ -1.01
USP3-218ENST00000560202 TRBV9A0A0B4J1U6 114 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 RBFOX3A6NFN3 312 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 A8MWP6 167 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 H3BQ15 152 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 OR10J1P30954 320 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 THAP8Q8NA92 274 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 OR4X1Q8NH49 305 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 PACRGQ96M98 296 aaPredicted RBP8.77□□□□□ -1.01
USP3-218ENST00000560202 MS4A10Q96PG2 267 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 NIPSNAP3BQ9BS92 247 aa8.77□□□□□ -1.01
USP3-218ENST00000560202 IGKV1D-37A0A075B6S9 117 aa8.76□□□□□ -1.01
USP3-218ENST00000560202 FAM181BA6NEQ2 426 aa8.76□□□□□ -1.01
USP3-218ENST00000560202 ZFP92A6NM28 416 aa8.76□□□□□ -1.01
USP3-218ENST00000560202 GGCTO75223 188 aaKnown RBP8.76□□□□□ -1.01
USP3-218ENST00000560202 BRI3O95415 125 aa8.76□□□□□ -1.01
USP3-218ENST00000560202 RPL29P47914 159 aaKnown RBP8.76□□□□□ -1.01
USP3-218ENST00000560202 ELLP55199 621 aaPredicted RBP8.76□□□□□ -1.01
USP3-218ENST00000560202 RHOGP84095 191 aa8.76□□□□□ -1.01
USP3-218ENST00000560202 CFHR3Q02985 330 aa8.76□□□□□ -1.01
USP3-218ENST00000560202 COA6Q5JTJ3 125 aaKnown RBP8.76□□□□□ -1.01
USP3-218ENST00000560202 ZNF506Q5JVG8 444 aa8.76□□□□□ -1.01
USP3-218ENST00000560202 Q8N2B8 174 aa8.76□□□□□ -1.01
USP3-218ENST00000560202 NECAP1Q8NC96 275 aa8.76□□□□□ -1.01
USP3-218ENST00000560202 C20orf24Q9BUV8 137 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms