RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ZNF701M0R085 212 aaPredicted RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 NOL3O60936 208 aaKnown RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 FABP1P07148 127 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 ZNF705DP0CH99 300 aaPredicted RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 ZNF705BP0CI00 300 aaPredicted RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 ZNF182P17025 639 aaPredicted RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 EMP1P54849 157 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 ATP5IP56385 69 aaPredicted RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 SSBP1Q04837 148 aaKnown RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 KLF9Q13886 244 aaPredicted RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 MEF2DQ14814 521 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 GPR107Q5VW38 600 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 SPATA31B1PQ5VZV4 182 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 SELENOHQ8IZQ5 122 aaKnown RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 OR4D10Q8NGI6 311 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 OR51G1Q8NGK1 321 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 ACY3Q96HD9 319 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 CLUHP3Q96NS8 147 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 NAA50Q9GZZ1 169 aaKnown RBP6.57□□□□□ -1.36
HDDC3-204ENST00000559834 NAA60Q9H7X0 242 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 KCNIP3Q9Y2W7 256 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 RFNGQ9Y644 331 aa6.57□□□□□ -1.36
HDDC3-204ENST00000559834 IGHV3OR16-12A0A075B7B8 117 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 DISC1C4P0D8 188 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 H3BMQ9 156 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 RTL8CO15255 209 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 PSG1P11464 419 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 MRPS10P82664 201 aaKnown RBP6.56□□□□□ -1.36
HDDC3-204ENST00000559834 RNF212Q495C1 297 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 C1orf194Q5T5A4 169 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 TMEM268Q5VZI3 342 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 OR8G2PQ6IF36 304 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 FOXI2Q6ZQN5 318 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 RNF125Q96EQ8 232 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 LINC00052Q96N35 136 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 NIPSNAP3BQ9BS92 247 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 RTBDNQ9BSG5 229 aaPredicted RBP6.56□□□□□ -1.36
HDDC3-204ENST00000559834 PBDC1Q9BVG4 233 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 SAV1Q9H4B6 383 aaPredicted RBP6.56□□□□□ -1.36
HDDC3-204ENST00000559834 GOLT1BQ9Y3E0 138 aa6.56□□□□□ -1.36
HDDC3-204ENST00000559834 A0A1B0GVG6 124 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 ZFP92A6NM28 416 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 SNRPGP15A8MWD9 76 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 GABARAPH6UMI1 98 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 NXPH3O95157 252 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 GABARAPO95166 117 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 IGKV3-20P01619 116 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 HBE1P02100 147 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 SULT1A3P0DMM9 295 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 SULT1A4P0DMN0 295 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 GPX4P36969 197 aaPredicted RBP6.55□□□□□ -1.36
HDDC3-204ENST00000559834 PSMB3P49720 205 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 OXA1LQ15070 435 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 NMSQ5H8A3 153 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 SAMD13Q5VXD3 122 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 EBLN2Q6P2I7 272 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 LGI3Q8N145 548 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 OR4B1Q8NGF8 309 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 COQ8AQ8NI60 647 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 LHFPL5Q8TAF8 219 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 IL22RA2Q969J5 263 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 SCGB3A2Q96PL1 93 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 C7orf50Q9BRJ6 194 aaKnown RBP6.55□□□□□ -1.36
HDDC3-204ENST00000559834 SCRT1Q9BWW7 348 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 DKK2Q9UBU2 259 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 GPR132Q9UNW8 380 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 TMEM56-RWDD3S4R434 201 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 FRAS1Q86XX4 4008 aa6.55□□□□□ -1.36
HDDC3-204ENST00000559834 IGLV2-18A0A075B6J9 118 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 PIGBOS1A0A0B4J2F0 54 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 CRYM-AS1A6NIL9 109 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 AKAIN1P0CW23 69 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 CCR6P51684 374 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 FXYD7P58549 80 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 SUPT4H1P63272 117 aaKnown RBP6.54□□□□□ -1.36
HDDC3-204ENST00000559834 PSG9Q00887 426 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 C1orf134Q5TEV5 83 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 FAM222AQ5U5X8 452 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 OR8I2Q8N0Y5 310 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 TMEM170AQ8WVE7 144 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 PPP1R14BQ96C90 147 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 PRRT1Q99946 306 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 RABL2AQ9UBK7 228 aaPredicted RBP6.54□□□□□ -1.36
HDDC3-204ENST00000559834 RABL2BQ9UNT1 228 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 MUC4Q99102 2169 aa6.54□□□□□ -1.36
HDDC3-204ENST00000559834 A0A0B4J2A0 478 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 ISLRO14498 428 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 RGS5O15539 181 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 HTN3P15516 51 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 S100A7P31151 101 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 MEOX2P50222 304 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 TMBIM6P55061 237 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 FAM3BP58499 235 aaPredicted RBP6.53□□□□□ -1.36
HDDC3-204ENST00000559834 SMCO1Q147U7 214 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 ZNF79Q15937 498 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 RRN3P1Q2M238 152 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 GDF5OSQ5U4N7 250 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 GSG1LQ6UXU4 331 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 Q6ZR54 194 aa6.53□□□□□ -1.36
HDDC3-204ENST00000559834 DTD1Q8TEA8 209 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms