RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TMEM231Q9H6L2 316 aa7.08□□□□□ -1.28
LDLR-210ENST00000559340 MRPL36Q9P0J6 103 aaKnown RBP7.08□□□□□ -1.28
LDLR-210ENST00000559340 UBE2L5PA0A1B0GUS4 154 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 A0A1B0GVG6 124 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 ARPC5O15511 151 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 TSPAN15O95858 294 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 IGKV1-17P01599 117 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 C1QBP02746 253 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 FGF7P21781 194 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 NPPCP23582 126 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 CAMLGP49069 296 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 EIF5AP63241 154 aaKnown RBP7.07□□□□□ -1.28
LDLR-210ENST00000559340 ZNF345Q14585 488 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 CLINT1Q14677 625 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 C9orf66Q5T8R8 295 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 BTNL8Q6UX41 500 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 TOMM20LQ6UXN7 152 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 Q6ZRG5 221 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 CYP2G1PQ6ZSU1 146 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 OR9G4Q8NGQ1 327 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 TMEM190Q8WZ59 177 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 GRAMD2BQ96HH9 432 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 METTL26Q96S19 204 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 PARD6GQ9BYG4 376 aaPredicted RBP7.07□□□□□ -1.28
LDLR-210ENST00000559340 MRPL27Q9P0M9 148 aaKnown RBP7.07□□□□□ -1.28
LDLR-210ENST00000559340 WDR83OSQ9Y284 106 aa7.07□□□□□ -1.28
LDLR-210ENST00000559340 PUS1Q9Y606 427 aaKnown RBP eCLIP7.07□□□□□ -1.28
LDLR-210ENST00000559340 IGHV3-35A0A0C4DH35 117 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 KANTRA0A1W2PQU2 76 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 A8MWP6 167 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 SEC14L6B5MCN3 397 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 SMLR1H3BR10 107 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 AGPAT2O15120 278 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 PFDN1O60925 122 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 CD5P06127 495 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 PSG1P11464 419 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 ZFP69Q49AA0 526 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 SMIM3Q9BZL3 60 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 DAZ1Q9NQZ3 744 aaKnown RBP7.06□□□□□ -1.28
LDLR-210ENST00000559340 SIGLEC8Q9NYZ4 499 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 TECRQ9NZ01 308 aaKnown RBP7.06□□□□□ -1.28
LDLR-210ENST00000559340 RABAC1Q9UI14 185 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 SLC45A2Q9UMX9 530 aa7.06□□□□□ -1.28
LDLR-210ENST00000559340 LSM4Q9Y4Z0 139 aaKnown RBP7.06□□□□□ -1.28
LDLR-210ENST00000559340 IGKV1D-37A0A075B6S9 117 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 WI2-2373I1.2A0A1W2PRP0 233 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 G3V3Q6 166 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 JTBO76095 146 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 IL4P05112 153 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 HNRNPCP07910 306 aaKnown RBP eCLIP7.05□□□□□ -1.28
LDLR-210ENST00000559340 RPL29P47914 159 aaKnown RBP7.05□□□□□ -1.28
LDLR-210ENST00000559340 EIF2B2P49770 351 aaKnown RBP7.05□□□□□ -1.28
LDLR-210ENST00000559340 ZNF90Q03938 601 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 LAMTOR1Q6IAA8 161 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 KCNRGQ8N5I3 272 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 OR1L4Q8NGR5 311 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 DYNLRB2Q8TF09 96 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 PPP1R14BQ96C90 147 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 RNF125Q96EQ8 232 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 ARPC5LQ9BPX5 153 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 NEURL2Q9BR09 285 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 WDR61Q9GZS3 305 aaKnown RBP7.05□□□□□ -1.28
LDLR-210ENST00000559340 FBXL17Q9UF56 701 aa7.05□□□□□ -1.28
LDLR-210ENST00000559340 IGKV1OR2-108A0A075B7D4 117 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 ELOA3CA0A087WX78 387 aaPredicted RBP7.04□□□□□ -1.28
LDLR-210ENST00000559340 RNF222A6NCQ9 220 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 C2orf70A6NJV1 201 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 HYPMO75409 117 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 SAP30O75446 220 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 LINC00869P0C866 280 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 C8orf88P0DMB2 117 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 FOLR2P14207 255 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 CBLN1P23435 193 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 PLP1P60201 277 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 LYZP61626 148 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 OPCMLQ14982 345 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 TM4SF20Q53R12 229 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 OR2K2Q8NGT1 345 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 GNPNAT1Q96EK6 184 aaPredicted RBP7.04□□□□□ -1.28
LDLR-210ENST00000559340 PFDN5Q99471 154 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 RNF2Q99496 336 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 MGST2Q99735 147 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 PBDC1Q9BVG4 233 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 GGTLC1Q9BX51 225 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 ZFAND3Q9H8U3 227 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 SMPXQ9UHP9 88 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 TIMM9Q9Y5J7 89 aa7.04□□□□□ -1.28
LDLR-210ENST00000559340 TRAV25A0A0B4J276 109 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 IGHV7-4-1A0A0J9YVY3 117 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 TMEM213A2RRL7 107 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 COX7A2P2O60397 106 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 MBP02144 154 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 CSN3P07498 182 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 OR5G3P0C626 314 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 ORM2P19652 201 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 CRYBB3P26998 211 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 B2MP61769 119 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 UNQ9165/PRO28630Q6UXU0 137 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 TMUB2Q71RG4 321 aa7.03□□□□□ -1.28
LDLR-210ENST00000559340 OR11H4Q8NGC9 324 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms