RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 DISC1C4P0D8 188 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 H0Y980 276 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 GGCTO75223 188 aaKnown RBP3.14□□□□□ -1.91
SPG11-211ENST00000558561 SNAPC5O75971 98 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 DUS4LO95620 317 aaKnown RBP3.14□□□□□ -1.91
SPG11-211ENST00000558561 TMEM50AO95807 157 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 PRSS1P07477 247 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 C8orf88P0DMB2 117 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 CD40LGP29965 261 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 PRCDQ00LT1 54 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 DHODHQ02127 395 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 PPP1R1AQ13522 171 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 TRIM16LQ309B1 348 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 CNPY1Q3B7I2 92 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 PVRIGQ6DKI7 326 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 LPCAT3Q6P1A2 487 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 C16orf54Q6UWD8 224 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 TOMM20LQ6UXN7 152 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 TMEM182Q6ZP80 229 aaPredicted RBP3.14□□□□□ -1.91
SPG11-211ENST00000558561 TMED4Q7Z7H5 227 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 GPHB5Q86YW7 130 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 FAM223AQ8IWN6 122 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 TMEM61Q8N0U2 210 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 FAM24BQ8N5W8 94 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 SLC35G3Q8N808 338 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 UBAC2Q8NBM4 344 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 VSTM2AQ8TAG5 236 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 ZFAND1Q8TCF1 268 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 CD300LFQ8TDQ1 290 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 PINX1Q96BK5 328 aaKnown RBP3.14□□□□□ -1.91
SPG11-211ENST00000558561 ZNF486Q96H40 463 aaPredicted RBP3.14□□□□□ -1.91
SPG11-211ENST00000558561 TMEM56Q96MV1 263 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 B9D2Q9BPU9 175 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 BCL7BQ9BQE9 202 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 MCRIP2Q9BUT9 160 aaKnown RBP3.14□□□□□ -1.91
SPG11-211ENST00000558561 MAGT1Q9H0U3 335 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 RBKSQ9H477 322 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 PLEKHA3Q9HB20 300 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 CACNG5Q9UF02 275 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 UBQLN2Q9UHD9 624 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 TMEM56-RWDD3S4R434 201 aa3.14□□□□□ -1.91
SPG11-211ENST00000558561 CSMD3Q7Z407 3707 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 TGOLN2O43493 480 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 PITX3O75364 302 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 ADAP1O75689 374 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 CCNKO75909 580 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 IFNA17P01571 189 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 IAPPP10997 89 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 ZP3P21754 424 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 TFPI2P48307 235 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 DEFB1P60022 68 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 ERVK-16P61578 105 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 SSBP1Q04837 148 aaKnown RBP3.13□□□□□ -1.91
SPG11-211ENST00000558561 PNRC1Q12796 327 aaPredicted RBP3.13□□□□□ -1.91
SPG11-211ENST00000558561 GUCA2BQ16661 112 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 HAGHQ16775 308 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 TIGITQ495A1 244 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 Q56UQ5 140 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 NMSQ5H8A3 153 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 ZNF57Q68EA5 555 aaPredicted RBP3.13□□□□□ -1.91
SPG11-211ENST00000558561 PLET1Q6UQ28 207 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 BTNL8Q6UX41 500 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 LINC00322Q6ZN03 302 aaPredicted RBP3.13□□□□□ -1.91
SPG11-211ENST00000558561 SLC25A42Q86VD7 318 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 TOMM5Q8N4H5 51 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 LSM10Q969L4 123 aaKnown RBP3.13□□□□□ -1.91
SPG11-211ENST00000558561 EEF1AKMT3Q96AZ1 226 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 RNF2Q99496 336 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 C20orf24Q9BUV8 137 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 ZNF436Q9C0F3 470 aaPredicted RBP3.13□□□□□ -1.91
SPG11-211ENST00000558561 FAM212BQ9NTI7 297 aaPredicted RBP3.13□□□□□ -1.91
SPG11-211ENST00000558561 C21orf62Q9NYP8 219 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 PRNDQ9UKY0 176 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 C14orf166Q9Y224 244 aaKnown RBP3.13□□□□□ -1.91
SPG11-211ENST00000558561 SMAD5-AS1Q9Y6J3 95 aa3.13□□□□□ -1.91
SPG11-211ENST00000558561 TENM2Q9NT68 2774 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 IGKV1D-37A0A075B6S9 117 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 TRAV6A0A075B6T7 132 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 TRBV7-1A0A0A6YYK4 115 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 C9orf170A2RU37 121 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 ZNF701M0R085 212 aaPredicted RBP3.12□□□□□ -1.91
SPG11-211ENST00000558561 LGALS9O00182 355 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 CHEK1O14757 476 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 CIDEAO60543 219 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 SFT2D2O95562 160 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 TSHBP01222 138 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 IGKV1-17P01599 117 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 AMBPP02760 352 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 VPREB1P12018 145 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 IL7P13232 177 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 HIST1H1BP16401 226 aaKnown RBP3.12□□□□□ -1.91
SPG11-211ENST00000558561 TBPP20226 339 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 GATA2P23769 480 aaPredicted RBP3.12□□□□□ -1.91
SPG11-211ENST00000558561 S100A5P33763 92 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 INSL3P51460 131 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 AKR1C2P52895 323 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 PAX9P55771 341 aa3.12□□□□□ -1.91
SPG11-211ENST00000558561 MRPS10P82664 201 aaKnown RBP3.12□□□□□ -1.91
SPG11-211ENST00000558561 ERHP84090 104 aaKnown RBP3.12□□□□□ -1.91
SPG11-211ENST00000558561 EWSR1Q01844 656 aaKnown RBP eCLIP3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms