RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 UNC13CQ8NB66 2214 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 UNC79Q9P2D8 2635 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 A0A087X0T9 212 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 EEF1E1-BLOC1S5C9J1V9 151 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 TIMM17BO60830 172 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 OCMP0CE72 109 aaPredicted RBP-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 COX7CP15954 63 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 YPEL3P61236 119 aaPredicted RBP-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 NAA20P61599 178 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 OCIAD2Q56VL3 154 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 AADACL4Q5VUY2 407 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 SPOPLQ6IQ16 392 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 C4orf22Q6V702 233 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 CANT1Q8WVQ1 401 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 RAB8BQ92930 207 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 CCL19Q99731 98 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 CCDC90BQ9GZT6 254 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 DRC3Q9H069 523 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 OR51I1Q9H343 314 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 FGFR1OP2Q9NVK5 253 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 FBXO5Q9UKT4 447 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 BOKQ9UMX3 212 aaPredicted RBP-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 PKIGQ9Y2B9 76 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 LSM5Q9Y4Y9 91 aaKnown RBP-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 STAB1Q9NY15 2570 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 KIF13BQ9NQT8 1826 aa-0.48□□□□□ -2.49
VPS13C-205ENST00000558088 MYO18AQ92614 2054 aaKnown RBP-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 ERICH2A1L162 156 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 TMEM213A2RRL7 107 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 ERC2-IT1O76042 136 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 LY6G6CO95867 125 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 MYL12AP19105 171 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 DYNLT1P63172 113 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 TSNQ15631 228 aaKnown RBP-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 Q8IYB0 196 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 PIGXQ8TBF5 258 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 WFDC5Q8TCV5 224 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 PRADC1Q9BSG0 188 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 TCEAL2Q9H3H9 227 aaPredicted RBP-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 CHMP4BQ9H444 224 aaKnown RBP-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 PLEKHJ1Q9NW61 149 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 IDI2-AS1Q9NZ38 188 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 ABCA12Q86UK0 2595 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 MUC12Q9UKN1 5478 aa-0.49□□□□□ -2.49
VPS13C-205ENST00000558088 ODAMA1E959 279 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 PSMD12O00232 456 aaPredicted RBP-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 SERPINE1P05121 402 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 UBE2G2P60604 165 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 RPS20P60866 119 aaKnown RBP-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 EIF5AP63241 154 aaKnown RBP-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 C20orf196Q8IYI0 205 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 PPP1R2P1Q96PQ5 205 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 GGACTQ9BVM4 153 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 CYSLTR1Q9Y271 337 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 LY96Q9Y6Y9 160 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 TMEM56-RWDD3S4R434 201 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 BCL9O00512 1426 aa-0.5□□□□□ -2.49
VPS13C-205ENST00000558088 C10orf142B7Z368 130 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 H0Y980 276 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 M0QZ92 97 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 FXYD1O00168 92 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 CXCR6O00574 342 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 PIRO00625 290 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 YKT6O15498 198 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 CYB5BO43169 146 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 SMIM17P0DL12 118 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 SPTBP11277 2137 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 DEFA3P59666 94 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 SNRPD2P62316 118 aaKnown RBP-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 CDK6Q00534 326 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 MLLT11Q13015 90 aaPredicted RBP-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 LRRN1Q6UXK5 716 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 ZNF833PQ6ZTB9 187 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 RAB37Q96AX2 223 aa-0.51□□□□□ -2.49
VPS13C-205ENST00000558088 KNTC1P50748 2209 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 PHRF1Q9P1Y6 1649 aaKnown RBP-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 KDM6AO15550 1401 aaPredicted RBP-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 TNS3Q68CZ2 1445 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 LOC107984156A0A0G2JMH3 177 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 PRORSD1PA6NEY8 169 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 M0R233 179 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 OR2J2O76002 312 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 CXCL8P10145 99 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 SRP14P37108 136 aaKnown RBP-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 RPL5P46777 297 aaKnown RBP-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 SKP1P63208 163 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 EIF3IQ13347 325 aaKnown RBP-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 OGFRL1Q5TC84 451 aaPredicted RBP-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 SFXN4Q6P4A7 337 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 ARL17AQ8IVW1 177 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 Q8TAT8 98 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 FAM172AQ8WUF8 416 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 LYSMD1Q96S90 227 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 KIFC1Q9BW19 673 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 PBOV1Q9GZY1 135 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 OR52A5Q9H2C5 316 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 HMCN2Q8NDA2 5059 aa-0.52□□□□□ -2.49
VPS13C-205ENST00000558088 CECR2Q9BXF3 1484 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 FANCMQ8IYD8 2048 aa-0.53□□□□□ -2.49
VPS13C-205ENST00000558088 A0A096LPI6 279 aa-0.53□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms