RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 PBDC1Q9BVG4 233 aa10.63□□□□□ -0.71
SHMT2-235ENST00000557740 RBKSQ9H477 322 aa10.63□□□□□ -0.71
SHMT2-235ENST00000557740 CLEC5AQ9NY25 188 aa10.63□□□□□ -0.71
SHMT2-235ENST00000557740 PFDN2Q9UHV9 154 aa10.63□□□□□ -0.71
SHMT2-235ENST00000557740 TBC1D24Q9ULP9 559 aa10.63□□□□□ -0.71
SHMT2-235ENST00000557740 FABP12A6NFH5 140 aa10.62□□□□□ -0.71
SHMT2-235ENST00000557740 ZFP92A6NM28 416 aa10.62□□□□□ -0.71
SHMT2-235ENST00000557740 ZNF705EA8MWA4 302 aaPredicted RBP10.62□□□□□ -0.71
SHMT2-235ENST00000557740 IGLL5B9A064 214 aa10.62□□□□□ -0.71
SHMT2-235ENST00000557740 RBMY1A1P0DJD3 496 aaKnown RBP10.62□□□□□ -0.71
SHMT2-235ENST00000557740 RBMY1CP0DJD4 496 aa10.62□□□□□ -0.71
SHMT2-235ENST00000557740 PSG1P11464 419 aa10.62□□□□□ -0.71
SHMT2-235ENST00000557740 TNFSF8P32971 234 aa10.62□□□□□ -0.71
SHMT2-235ENST00000557740 SUPT4H1P63272 117 aaKnown RBP10.62□□□□□ -0.71
SHMT2-235ENST00000557740 KLF9Q13886 244 aaPredicted RBP10.62□□□□□ -0.71
SHMT2-235ENST00000557740 RBMY1FQ15415 496 aaKnown RBP10.62□□□□□ -0.71
SHMT2-235ENST00000557740 OR51G1Q8NGK1 321 aa10.62□□□□□ -0.71
SHMT2-235ENST00000557740 RNF125Q96EQ8 232 aa10.62□□□□□ -0.71
SHMT2-235ENST00000557740 C1QTNF4Q9BXJ3 329 aa10.62□□□□□ -0.71
SHMT2-235ENST00000557740 SLIRPQ9GZT3 109 aaKnown RBP10.62□□□□□ -0.71
SHMT2-235ENST00000557740 H3BMQ9 156 aa10.61□□□□□ -0.71
SHMT2-235ENST00000557740 BUB3O43684 328 aa10.61□□□□□ -0.71
SHMT2-235ENST00000557740 FABP1P07148 127 aa10.61□□□□□ -0.71
SHMT2-235ENST00000557740 HLA-DMBP28068 263 aa10.61□□□□□ -0.71
SHMT2-235ENST00000557740 ATP5IP56385 69 aaPredicted RBP10.61□□□□□ -0.71
SHMT2-235ENST00000557740 AP3S2P59780 193 aa10.61□□□□□ -0.71
SHMT2-235ENST00000557740 OR8G2PQ6IF36 304 aa10.61□□□□□ -0.71
SHMT2-235ENST00000557740 TMED4Q7Z7H5 227 aa10.61□□□□□ -0.71
SHMT2-235ENST00000557740 MCFD2Q8NI22 146 aa10.61□□□□□ -0.71
SHMT2-235ENST00000557740 SEPSECSQ9HD40 501 aaKnown RBP10.61□□□□□ -0.71
SHMT2-235ENST00000557740 X6R8D5 127 aa10.61□□□□□ -0.71
SHMT2-235ENST00000557740 SOSTQ9BQB4 213 aa10.6□□□□□ -0.71
SHMT2-235ENST00000557740 PAIP2BQ9ULR5 123 aaKnown RBP10.6□□□□□ -0.71
SHMT2-235ENST00000557740 AGRNO00468 2067 aa10.6□□□□□ -0.71
SHMT2-235ENST00000557740 ELOA3CA0A087WX78 387 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-235ENST00000557740 TRAV10A0A0B4J240 114 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 DUXBA0A1W2PPF3 345 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 VAMP1P23763 118 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 GPX4P36969 197 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-235ENST00000557740 NKX2-1P43699 371 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-235ENST00000557740 LYZP61626 148 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 GAMTQ14353 236 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 PYDC2Q56P42 97 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 Q6ZTC4 211 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 TOMM5Q8N4H5 51 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 CSNK1G2-AS1Q8NCQ2 148 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 XCL2Q9UBD3 114 aa10.59□□□□□ -0.71
SHMT2-235ENST00000557740 H3BMM0 161 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 IAPPP10997 89 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 HLA-DRB4P13762 266 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 ID1P41134 155 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 RAB11AP62491 216 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 ZNF90Q03938 601 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 TMEM128Q5BJH2 165 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 TRIM63Q969Q1 353 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 PPP1R14BQ96C90 147 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 APLNQ9ULZ1 77 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 HLA-DRB4X5D2U9 266 aa10.58□□□□□ -0.72
SHMT2-235ENST00000557740 PRR20EP86478 221 aa10.57□□□□□ -0.72
SHMT2-235ENST00000557740 PRR20CP86479 221 aa10.57□□□□□ -0.72
SHMT2-235ENST00000557740 PRR20DP86480 221 aa10.57□□□□□ -0.72
SHMT2-235ENST00000557740 PRR20BP86481 221 aa10.57□□□□□ -0.72
SHMT2-235ENST00000557740 PRR20AP86496 221 aa10.57□□□□□ -0.72
SHMT2-235ENST00000557740 COQ8AQ8NI60 647 aa10.57□□□□□ -0.72
SHMT2-235ENST00000557740 LINC00052Q96N35 136 aa10.57□□□□□ -0.72
SHMT2-235ENST00000557740 CELA1Q9UNI1 258 aa10.57□□□□□ -0.72
SHMT2-235ENST00000557740 KMT2AQ03164 3969 aa10.57□□□□□ -0.72
SHMT2-235ENST00000557740 IGHV4-4A0A075B6R2 117 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 IGKV1D-37A0A075B6S9 117 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 SNRPGP15A8MWD9 76 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 PITX3O75364 302 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 MED6O75586 246 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 PSMB3P49720 205 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 RPP30P78346 268 aaKnown RBP10.56□□□□□ -0.72
SHMT2-235ENST00000557740 OR2F1Q13607 317 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 C1orf194Q5T5A4 169 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 FOXI2Q6ZQN5 318 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 CIB3Q96Q77 187 aaPredicted RBP10.56□□□□□ -0.72
SHMT2-235ENST00000557740 TRGV9Q99603 122 aa10.56□□□□□ -0.72
SHMT2-235ENST00000557740 CCDC160A6NGH7 325 aa10.55□□□□□ -0.72
SHMT2-235ENST00000557740 IGKV3-20P01619 116 aa10.55□□□□□ -0.72
SHMT2-235ENST00000557740 SLC25A6P12236 298 aa10.55□□□□□ -0.72
SHMT2-235ENST00000557740 S100A5P33763 92 aa10.55□□□□□ -0.72
SHMT2-235ENST00000557740 OR8I2Q8N0Y5 310 aa10.55□□□□□ -0.72
SHMT2-235ENST00000557740 LRTM2Q8N967 370 aa10.55□□□□□ -0.72
SHMT2-235ENST00000557740 DEDD2Q8WXF8 326 aa10.55□□□□□ -0.72
SHMT2-235ENST00000557740 SLC25A21Q9BQT8 299 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-235ENST00000557740 RNF126Q9BV68 326 aa10.55□□□□□ -0.72
SHMT2-235ENST00000557740 WDR12Q9GZL7 423 aaKnown RBP10.55□□□□□ -0.72
SHMT2-235ENST00000557740 V9GYH0 126 aa10.55□□□□□ -0.72
SHMT2-235ENST00000557740 DEFB131BA0A096LNP1 70 aa10.54□□□□□ -0.72
SHMT2-235ENST00000557740 PPP1R1AQ13522 171 aa10.54□□□□□ -0.72
SHMT2-235ENST00000557740 GDF5OSQ5U4N7 250 aa10.54□□□□□ -0.72
SHMT2-235ENST00000557740 SAMD13Q5VXD3 122 aa10.54□□□□□ -0.72
SHMT2-235ENST00000557740 ZNF767PQ75MW2 155 aa10.54□□□□□ -0.72
SHMT2-235ENST00000557740 SAV1Q9H4B6 383 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-235ENST00000557740 TMED3Q9Y3Q3 217 aa10.54□□□□□ -0.72
SHMT2-235ENST00000557740 IGHV3OR16-12A0A075B7B8 117 aa10.53□□□□□ -0.72
SHMT2-235ENST00000557740 ISLRO14498 428 aa10.53□□□□□ -0.72
SHMT2-235ENST00000557740 SYNGR2O43760 224 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms