RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 OR4F5Q8NH21 305 aa9.77□□□□□ -0.84
SHMT2-233ENST00000557529 OR4F4Q96R69 305 aa9.77□□□□□ -0.84
SHMT2-233ENST00000557529 NKX6-2Q9C056 277 aaPredicted RBP9.77□□□□□ -0.84
SHMT2-233ENST00000557529 PRDM13Q9H4Q3 707 aa9.77□□□□□ -0.84
SHMT2-233ENST00000557529 GSX1Q9H4S2 264 aaPredicted RBP9.77□□□□□ -0.84
SHMT2-233ENST00000557529 F6UZH7 168 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 PDE6DO43924 150 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 SCO1O75880 301 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 CEBPGP53567 150 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 LYZP61626 148 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 C15orf32Q32M92 178 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 CST9LP1Q5W188 147 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 LINC00305Q7Z4B0 112 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 FAM167A-AS1Q96KT0 104 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 ATP6V0BQ99437 205 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 VPREB3Q9UKI3 123 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 HIGD1AQ9Y241 93 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 CSPG4Q6UVK1 2322 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 UNC79Q9P2D8 2635 aa9.76□□□□□ -0.85
SHMT2-233ENST00000557529 MAP1AP78559 2803 aaPredicted RBP9.76□□□□□ -0.85
SHMT2-233ENST00000557529 FAM223BA6NKX1 122 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 F8W735 103 aaPredicted RBP9.75□□□□□ -0.85
SHMT2-233ENST00000557529 UBE2G2P60604 165 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 BLCAPP62952 87 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 FAM74A3Q4VXF1 159 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 ATRAIDQ6UW56 229 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 FAM223AQ8IWN6 122 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 CLRN3Q8NCR9 226 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 OR5AU1Q8NGC0 362 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 ZNF502Q8TBZ5 544 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 Q8WTZ3 238 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 EEF1AKMT3Q96AZ1 226 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 NIPSNAP3BQ9BS92 247 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 SLC25A2Q9BXI2 301 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 S4R3C0 116 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 TRBV7-1A0A0A6YYK4 115 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 NUPL2O15504 423 aaKnown RBP9.75□□□□□ -0.85
SHMT2-233ENST00000557529 CD5LO43866 347 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 OR2C1O95371 312 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 UBE2L3P68036 154 aaKnown RBP9.75□□□□□ -0.85
SHMT2-233ENST00000557529 ATP5G2Q06055 141 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 FAM90A2PQ658T7 463 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 ZNF503Q96F45 646 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 UHRF2Q96PU4 802 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 PAXXQ9BUH6 204 aa9.75□□□□□ -0.85
SHMT2-233ENST00000557529 GCN1Q92616 2671 aaKnown RBP9.75□□□□□ -0.85
SHMT2-233ENST00000557529 TRAV5A0A0B4J249 113 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 WI2-2373I1.2A0A1W2PRP0 233 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 FAM74A7A6NL05 159 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 H3BQ15 152 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 M0R036 132 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 CTSGP08311 255 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 S100A7P31151 101 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 MORN5Q5VZ52 161 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 ZNF491Q8N8L2 437 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 RNF125Q96EQ8 232 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 TVP23CQ96ET8 276 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 USMG5Q96IX5 58 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 OR51M1Q9H341 326 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 MRPL27Q9P0M9 148 aaKnown RBP9.74□□□□□ -0.85
SHMT2-233ENST00000557529 RNF24Q9Y225 148 aa9.74□□□□□ -0.85
SHMT2-233ENST00000557529 PUS1Q9Y606 427 aaKnown RBP eCLIP9.74□□□□□ -0.85
SHMT2-233ENST00000557529 A0A1W2PRE2 83 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 OR2T8A6NH00 312 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 ZNF727A8MUV8 499 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 HOXA3O43365 443 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-233ENST00000557529 IGHV3-23P01764 117 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 TRGV3P03979 118 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 IL4P05112 153 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 PPIFP30405 207 aaKnown RBP9.73□□□□□ -0.85
SHMT2-233ENST00000557529 SRP14P37108 136 aaKnown RBP9.73□□□□□ -0.85
SHMT2-233ENST00000557529 ATP5G3P48201 142 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 PNRC1Q12796 327 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-233ENST00000557529 BTN1A1Q13410 526 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 RHEBQ15382 184 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 ZNF600Q6ZNG1 722 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 TMEM86BQ8N661 226 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 MS4A10Q96PG2 267 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 SMIM7Q9BQ49 75 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 SLC25A39Q9BZJ4 359 aaPredicted RBP9.73□□□□□ -0.85
SHMT2-233ENST00000557529 NPFFR1Q9GZQ6 430 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 LINC00527Q9UJ94 153 aa9.73□□□□□ -0.85
SHMT2-233ENST00000557529 YTHDF2Q9Y5A9 579 aaKnown RBP9.73□□□□□ -0.85
SHMT2-233ENST00000557529 CCDC168Q8NDH2 2452 aa9.72□□□□□ -0.85
SHMT2-233ENST00000557529 CLEC3BP05452 202 aa9.72□□□□□ -0.85
SHMT2-233ENST00000557529 OR10J4P0C629 311 aa9.72□□□□□ -0.85
SHMT2-233ENST00000557529 HNF1AP20823 631 aa9.72□□□□□ -0.85
SHMT2-233ENST00000557529 GPR183P32249 361 aa9.72□□□□□ -0.85
SHMT2-233ENST00000557529 AWAT1Q58HT5 328 aa9.72□□□□□ -0.85
SHMT2-233ENST00000557529 RPUSD4Q96CM3 377 aaKnown RBP9.72□□□□□ -0.85
SHMT2-233ENST00000557529 SHANK2-AS3Q9BTD1 123 aa9.72□□□□□ -0.85
SHMT2-233ENST00000557529 PRSS22Q9GZN4 317 aa9.72□□□□□ -0.85
SHMT2-233ENST00000557529 TMEM14CQ9P0S9 112 aa9.72□□□□□ -0.85
SHMT2-233ENST00000557529 ITPR3Q14573 2671 aa9.71□□□□□ -0.85
SHMT2-233ENST00000557529 PDZD2O15018 2839 aa9.71□□□□□ -0.86
SHMT2-233ENST00000557529 A0A0G2JLM5 398 aa9.71□□□□□ -0.86
SHMT2-233ENST00000557529 TMEM89A2RUT3 159 aa9.71□□□□□ -0.86
SHMT2-233ENST00000557529 H3BRN7 92 aa9.71□□□□□ -0.86
SHMT2-233ENST00000557529 TGOLN2O43493 480 aa9.71□□□□□ -0.86
SHMT2-233ENST00000557529 IGLV1-40P01703 118 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms