RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CRYGCP07315 174 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 WT1-ASQ06250 92 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 VMA21Q3ZAQ7 101 aa13.13□□□□□ -0.31
SHMT2-232ENST00000557487 ZNF474Q6S9Z5 364 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-232ENST00000557487 DSCAMO60469 2012 aa13.12□□□□□ -0.31
SHMT2-232ENST00000557487 IGLL1P15814 213 aa13.12□□□□□ -0.31
SHMT2-232ENST00000557487 MC5RP33032 325 aa13.12□□□□□ -0.31
SHMT2-232ENST00000557487 PAX2Q02962 417 aa13.12□□□□□ -0.31
SHMT2-232ENST00000557487 PRR27Q6MZM9 219 aa13.12□□□□□ -0.31
SHMT2-232ENST00000557487 NUP37Q8NFH4 326 aa13.12□□□□□ -0.31
SHMT2-232ENST00000557487 OR4F17Q8NGA8 305 aa13.12□□□□□ -0.31
SHMT2-232ENST00000557487 IGF2RP11717 2491 aa13.12□□□□□ -0.31
SHMT2-232ENST00000557487 HEATR1Q9H583 2144 aaKnown RBP13.12□□□□□ -0.31
SHMT2-232ENST00000557487 URB1O60287 2271 aaKnown RBP13.12□□□□□ -0.31
SHMT2-232ENST00000557487 LTAP01374 205 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 HINT1P49773 126 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-232ENST00000557487 CAMPP49913 170 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 ZNF137PP52743 207 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 ATOH7Q8N100 152 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 C19orf71A6NCJ1 209 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 PGPA6NDG6 321 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 CGB1A6NKQ9 187 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 K7EP13 123 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 CORTO00230 105 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 P01737 135 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 LGALS7P47929 136 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 PLP1P60201 277 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 SSBP2P81877 361 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-232ENST00000557487 RBPMS2Q6ZRY4 209 aaKnown RBP13.11□□□□□ -0.31
SHMT2-232ENST00000557487 NDFIP1Q9BT67 221 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 FRYQ5TBA9 3013 aa13.11□□□□□ -0.31
SHMT2-232ENST00000557487 MAP1BP46821 2468 aaKnown RBP13.1□□□□□ -0.31
SHMT2-232ENST00000557487 ACACAQ13085 2346 aa13.1□□□□□ -0.31
SHMT2-232ENST00000557487 K7ENP7 123 aa13.1□□□□□ -0.31
SHMT2-232ENST00000557487 IGLV2-23P01705 113 aa13.1□□□□□ -0.31
SHMT2-232ENST00000557487 NBEAP1P0C6P0 100 aa13.1□□□□□ -0.31
SHMT2-232ENST00000557487 SSX8Q7RTT4 187 aa13.1□□□□□ -0.31
SHMT2-232ENST00000557487 DAZAP1Q96EP5 407 aaKnown RBP13.1□□□□□ -0.31
SHMT2-232ENST00000557487 PRORYQ9H606 182 aa13.1□□□□□ -0.31
SHMT2-232ENST00000557487 CCL25O15444 150 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 LIPFP07098 398 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 RPS20P60866 119 aaKnown RBP13.09□□□□□ -0.31
SHMT2-232ENST00000557487 FAM120AOSQ5T036 256 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 ZNF841Q6ZN19 808 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 SSBP4Q9BWG4 385 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-232ENST00000557487 TMEM191AQ9H0A3 160 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 ASPMQ8IZT6 3477 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 TRBV6-1A0A0K0K1D8 114 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 OR4C46A6NHA9 309 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 E7EUB6 86 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 SYS1-DBNDD2H3BUS1 97 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 CEACAM4O75871 244 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 MOSP00540 346 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 GPR6P46095 362 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-232ENST00000557487 GNG5P63218 68 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 MAJINQ3KP22 176 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 LRRC10Q5BKY1 277 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 ALKBH2Q6NS38 261 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 URB1-AS1Q96HZ7 61 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 ZNRD1Q9P1U0 126 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 PPIAL4AQ9Y536 164 aa13.09□□□□□ -0.31
SHMT2-232ENST00000557487 VWC2LB2RUY7 222 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 HSBP1L1C9JCN9 74 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 NPIPB6E9PJ23 425 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 CD40P25942 277 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 SRSF6Q13247 344 aaKnown RBP13.08□□□□□ -0.32
SHMT2-232ENST00000557487 C1orf185Q5T7R7 199 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 PET117Q6UWS5 81 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 ZADH2Q8N4Q0 377 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 TEX45Q8NA69 505 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 TMEM116Q8NCL8 245 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 ST6GALNAC6Q969X2 333 aa13.08□□□□□ -0.32
SHMT2-232ENST00000557487 IGHV2-70DA0A0C4DH43 119 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 LEPROTL1O95214 131 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 HLA-DRB1P01911 266 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 TCRAP04437 139 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 WT1P19544 449 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-232ENST00000557487 TMEM200BQ69YZ2 307 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 OR1B1Q8NGR6 318 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 C8orf46Q8TAG6 207 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 MS4A6AQ9H2W1 248 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 RAI1Q7Z5J4 1906 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-232ENST00000557487 INTS1Q8N201 2190 aaKnown RBP13.07□□□□□ -0.32
SHMT2-232ENST00000557487 TNCP24821 2201 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 A0A1W2PPI3 338 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 HAX1O00165 279 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 GP9P14770 177 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 UNQ5815/PRO19632Q6UWF5 114 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 TCF24Q7RTU0 167 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 OTORQ9NRC9 128 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 TMEM14CQ9P0S9 112 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 HSPB8Q9UJY1 196 aa13.07□□□□□ -0.32
SHMT2-232ENST00000557487 FREM2Q5SZK8 3169 aa13.06□□□□□ -0.32
SHMT2-232ENST00000557487 TRAV30A0A087WSZ9 112 aa13.06□□□□□ -0.32
SHMT2-232ENST00000557487 LOC102724200A0A096LPH7 203 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-232ENST00000557487 IGHV1-24A0A0C4DH33 117 aa13.06□□□□□ -0.32
SHMT2-232ENST00000557487 ORM2P19652 201 aa13.06□□□□□ -0.32
SHMT2-232ENST00000557487 FOXA3P55318 350 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-232ENST00000557487 C12orf54Q6X4T0 127 aa13.06□□□□□ -0.32
SHMT2-232ENST00000557487 USP24Q9UPU5 2620 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms